barSeed - Barley Seed Development Database

Probe CUST_10966_PI390587928

Source Contig U35_14600

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10966_PI390587928	Hv_44K_v2	TGTCTTTTGCTATTTAAACTTCCATTTTGTGGTAGTTTGAGGGCGCTTGTTTGGGCTAAA	831	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_40266.1	1022	7e-23	206 - 262	100	57 / 57	minus	ABC01879 ABC01883 ABC36802 ABC36834
JLOC1	JLOC1_26316.1	825	1e-22	1 - 56	100	56 / 56	minus
Harvest35	U35_14600	904	3e-25	832 - 891	100	60 / 60	plus

Contig Sequence (904 bp)

>U35_14600 904 Hv_44K_v2
GAGAAAGGCGAGCAAAAGTTTCACTTGGCCTCCCCCCCTCGAGTCCTCCGGCGAGTCTCT
GCGGCGGCGGCGGCGATGGCTTCCTTCTCCGAGGCTCCCCCCGGGAACCCCGACGCCGGC
GCCAAGATCTTCAAGACCAAGTGCGCGCAGTGCCACACCGTCGACGCGGGCGCGGGCCAC
AAGCAAGGTCCAAACTTGCATGGTCTGTTTGGGAGGCAGTCGGGCACCACCGCTGGTTAC
TCCTACTCTGCGGCAAACAAGAACAAGGCTGTGGAGTGGGAGGAGAACACTCTGTATGAC
TACTTGCTTAATCCCAAGAAGTACATTCCTGGAACCAAGATGGTCTTCCCTGGTCTGAAG
AAGCCACAGGACCGTGCTGATCTCATTGCGTACCTGAAGAAAGCCACCTCCTCTTGAAAG
GGCATGATGCTGTGATCATGTCATTACGAGTGAATTCATTTTGCAGTAAAATAATAAGAT
TAGACATTAATAGTCACTCTGGTTTAATGGGGTGGGTGATCCACGAGACAATTATCTTGC
GAATTTCGTTTTTATGATATGGGTTTCATATCTCTTAGGTTTAGTTGGTAAAATCTTCGT
CAATCTTTTGATTCAGTTGCTGGAAAATCCCAGAACGCATGTTTTGACCACCAGGTGGCG
GTGGGACTGGAATGCACACCCATGTTGATGAACATGAGATCTTTAAAATTGATATATAAA
GCTTTCTGCCTGTGTTATGGAGTTGTCAAAAAAAAAAAAAAAAACTGCCATGTTGCTCGT
CCTATGTGTATTTCCAGTCGTGACTCTTACCATTGGCTGATGGTGAGTATATGTCTTTTG
CTATTTAAACTTCCATTTTGTGGTAGTTTGAGGGCGCTTGTTTGGGCTAAAAAAAAAAAA
AAAA

Homology of Contig U35_14600 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34770.1	113	4e-64	protein\|cytochrome c, putative, expressed
Brachypodium v1_2	Bradi2g25030.1	114	4e-65
Arabidopsis v10	AT1G22840.1	114	5e-65	\| Symbols: CYTC-1, ATCYTC-A \| CYTOCHROME C-1 \| chr1:8079384-8080286 FORWARD LENGTH=114