barSeed - Barley Seed Development Database

Probe CUST_10965_PI390587928

Source Contig U35_14601

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10965_PI390587928	Hv_44K_v2	TTCTCTCGTAGCGGTGGTGTTCCGAGACATATAATCATGTGTTGTCGTTCCATGAAAAAA	1047	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.097	0.349	2.003	2.041	1.051	0.992
Raw	2144.900	12605.040	62467.700	96107.267	18111.767	18608.567

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52381.1	1345	3e-21	1101 - 1154	100	54 / 54	plus	ABC01881 ABC45038
MLOC	MLOC_52380.1	1520	3e-21	1434 - 1487	100	54 / 54	plus	ABC01881 ABC38339 ABC45038
MLOC	MLOC_52380.2	1120	3e-21	1066 - 1119	100	54 / 54	plus	ABC01881 ABC38339 ABC45038
JLOC1	JLOC1_33564.1	1559	2e-21	1299 - 1352	100	54 / 54	plus
Harvest21	ABC45038	517	6e-22	43 - 96	100	54 / 54	minus	ABC45038
Harvest21	ABC01881	1542	6e-22	1435 - 1494	97	58 / 60	plus	ABC01881
Harvest35	U35_14601	1220	3e-25	1048 - 1107	100	60 / 60	plus

Contig Sequence (1220 bp)

>U35_14601 1220 Hv_44K_v2
TCGAGCACTGTTGGCCTGCGTGCACTGCACACCACCACCCCACTCCACTCTCTCCCACGC
CACGCCGACTAGCTCCCTCCCCCTCTTTGCTTGCCAGCTACTAGTGCTCTGACCTCGGCG
GCGAGAGAAGAGCTCGAGCTCCATCCCGCTGCTTGCTGCAATGGCGGCTCCTCTGGTCCT
CATGCTCTTGCTCGCCATGTTCGCCGGCTCAGATGCGATGTACTGCGTGTGCAAGTCGGA
CGCGAACCCGGTGGCGATGCAGAAGGCCATCGACTACGCGTGCGGCAAGGGCGCCGACTG
CACCCAGATCACCTCCAACGGGCCCTGCTTCCAGCCCATCTCCGTCGTCGCCCACTGCTC
CTACGCCTGCAACAGCTACTACCAGAAGAACGCCGGCATGGGCGCCACCTGCGACTTCAT
GGGCGTCGCCACCCTCACCGGCGCTGACCCCAGCGCCGGATCCTGCAAATACCCCGCCAG
CGCAAGCGGCGTGGGCACTGGAGCAGGCACCGGCGGCATGGGCACCGGCGCTGGAGCAGG
AACTGGCGGCATGGGAACCGGCACAGGAACCAGCACCGGAACGGGCACGGGCGTCAGCAC
CGGCACCGGCGGCATGGGGAGCATGACCCCGCCGGGCGCGACCAGCACCGGGATGCCGGG
AAGCCCCTTCGGCGGCGGCGCGTACGGCCCGTCGGGCATGAGCCCGGACTACAGCGCGGC
CGTCGTCGGTCGCCGCGTGGCCACCGCGGGCCTCCTCGTGGCGGCAGCCGCGCCGCTCCT
CCTCCACTTCGTCTGATCGGGTGGCCGCTGGTTGGCCGGCGGAAAGGCGCGTCGGCAATG
CCCGCCGCTTTTGCGTCCCGTCGGCTCGCCTTTCCGGCGTGTTTTGATGGTCCGTTGGAT
CGGGAGTACTGCTAGTAGGTGCTAGGGTTTGTCCATGGGTGGTACTGTTAAACTGACATT
GTTGTATCCGCGCGCCCCCCATGTGGAGCGTGTTTGTACCGGTGCGGTTCGTGGTGGTAG
AGATGTGATCTAGCGGATTCTTTTTCTTTCTCTCGTAGCGGTGGTGTTCCGAGACATATA
ATCATGTGTTGTCGTTCCATGAAAAAAAAAAAAAAAAACTTTTGTACCGCTAGCTCAAAA
AAAAAAAAAAAAATTTTTGCTAGTAGATAGTAGCGATGTCTTTGGCTTGGCATCGTCAGG
CCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14601 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None