barSeed - Barley Seed Development Database

Probe CUST_10959_PI390587928

Source Contig U35_14607

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10959_PI390587928	Hv_44K_v2	GCTAGTTGGCCCTGTTTTCTTCTTGCATACATGCTTCTGTGTAATAATATAACTGAATAA	272	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68931.1	363	2e-24	291 - 350	100	60 / 60	plus	ABC00051 ABC00255 ABC00507 ABC43663
JLOC1	JLOC1_45652.1	678	8e-25	361 - 420	100	60 / 60	plus
Harvest21	ABC00507	369	3e-25	273 - 332	100	60 / 60	plus	ABC00507
Harvest35	U35_14607	369	3e-25	273 - 332	100	60 / 60	plus

Contig Sequence (369 bp)

>U35_14607 369 Hv_44K_v2
GTCTTAGTCTATCATACAGCCCTTTTAGTCTCTCGCAAGAAACTAAATGGATCGGTCCAC
GAAGGTCTTTGTGGTCGTCCTCCTGCTTCTTGTGGCCACAGAGTTCCAGGGAGCAGTGCA
GGTGGCTTTTGCGAGGGATTGTAGGTCAGACAGCAAAAAGTTTGTGGGGCTGTGCATGAG
CGACACCAACTGTGCAAGTGTTTGCCTGACCGAGCGTTTCACCGGAGGCAAGTGCGACGG
CATTCTGAAGCATTGTGTCTGTACCAAGGACTGCTAGTTGGCCCTGTTTTCTTCTTGCAT
ACATGCTTCTGTGTAATAATATAACTGAATAATACTAGACCTGCATCTTTATAAAAAAAA
AAAAAAAAA

Homology of Contig U35_14607 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None