barSeed - Barley Seed Development Database

Probe CUST_10958_PI390587928

Source Contig U35_14608

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10958_PI390587928	Hv_44K_v2	ATTAAACATCTCCAGTGATTGCTTGGTAGGTCAAAGTATCTTTAGTGGTTGGTTCTCAAA	488	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359426	997	7e-23	662 - 718	100	57 / 57	plus	ABC02665 ABC02666 ABC02668
MLOC	AK252717.1	843	7e-23	678 - 734	100	57 / 57	plus	ABC02665 ABC02666 ABC02668
MLOC	MLOC_79729.2	1593	7e-23	1244 - 1300	100	57 / 57	plus	ABC02666 ABC02668
MLOC	MLOC_79729.3	732	7e-23	229 - 285	100	57 / 57	plus	ABC02666 ABC02668
MLOC	MLOC_79729.1	1089	7e-23	910 - 966	100	57 / 57	plus	ABC02666 ABC02668
JLOC1	JLOC1_53095.1	614	4e-23	268 - 324	100	57 / 57	plus
Harvest21	ABC02666	562	3e-25	15 - 74	100	60 / 60	minus	ABC02666
Harvest21	ABC02668	944	1e-23	657 - 713	100	57 / 57	plus	ABC02668
Harvest35	U35_14608	562	3e-25	489 - 548	100	60 / 60	plus
Harvest35	U35_14611	950	1e-23	657 - 713	100	57 / 57	plus

Contig Sequence (562 bp)

>U35_14608 562 Hv_44K_v2
TGCGGGATTTCAAGCGGCTGCAGCATGACCCACCCGCCGGGATNAGCGGCGCGCCGCACG
ACAACAACATCATGCTCTGGAACGCCGTCATCTTCGGCCCGGATGATACGCCATGGGACG
GAGGCACATTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCCAACAAGCCGCCAACTT
TTATGCAGATGGGAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCCCTATATATGA
CGTTGCTGCCATATTGACTTCTATTCAGTCCTTGCTGTGTGATCCAAACCCCAACTCTCC
AGCAAATTCGGAAGCTGCCAGAATGTTCAGTGAGAACAAGCGAGAGTACAACCGTAAAGT
CCGTGAGATCGTGGAGCAGAGCTGGACTGCTGACTAAGGCAGGGGAAGGGGGCCATTGCC
AGAAAGTTGCAATAAGCAACCATGAAACCTTTATTTATGGCCCTCAATAGTTGTTTCTCA
GATGAAACATTAAACATCTCCAGTGATTGCTTGGTAGGTCAAAGTATCTTTAGTGGTTGG
TTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14608 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07240.2	153	5e-69	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi1g56510.1	153	4e-70
Arabidopsis v10	AT2G02760.1	152	9e-67	\| Symbols: ATUBC2, UBC2 \| ubiquiting-conjugating enzyme 2 \| chr2:774271-775149 FORWARD LENGTH=152