barSeed - Barley Seed Development Database

Probe CUST_10957_PI390587928

Source Contig U35_14609

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10957_PI390587928	Hv_44K_v2	AGCAAATTCGGAAGCTGCCAGAATGTTCAGTGAGAACAAGCGAGAGTACAACCGTAAAGT	537	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359426	997	2e-24	474 - 533	100	60 / 60	plus	ABC02665 ABC02666 ABC02668
MLOC	AK252717.1	843	2e-24	490 - 549	100	60 / 60	plus	ABC02665 ABC02666 ABC02668
MLOC	MLOC_79729.2	1593	2e-24	1056 - 1115	100	60 / 60	plus	ABC02666 ABC02668
MLOC	MLOC_79729.3	732	2e-24	41 - 100	100	60 / 60	plus	ABC02666 ABC02668
MLOC	MLOC_79729.1	1089	2e-24	722 - 781	100	60 / 60	plus	ABC02666 ABC02668
JLOC1	JLOC1_53095.1	614	8e-25	80 - 139	100	60 / 60	plus
Harvest21	ABC02668	944	3e-25	469 - 528	100	60 / 60	plus	ABC02668
Harvest21	ABC02667	612	3e-25	538 - 597	100	60 / 60	plus
Harvest21	ABC02666	562	3e-25	203 - 262	100	60 / 60	minus	ABC02666
Harvest35	U35_14611	950	3e-25	469 - 528	100	60 / 60	plus
Harvest35	U35_14609	612	3e-25	538 - 597	100	60 / 60	plus
Harvest35	U35_14608	562	3e-25	301 - 360	100	60 / 60	plus

Contig Sequence (612 bp)

>U35_14609 612 Hv_44K_v2
TTTGGAATTATCCACCGCCACTTTCCACCCCTACCTGTTGTAGATTGCAGATGCCCGCAC
ATTCTCTCTCTGGACGCAACTAGCCCTAGCGAGTTGCGGCGAGAGTGAGTGCGTACGTGA
GCCCTAGCGGGTTCGAGGAGGCAGCGCCGGCGGCGGAGATGTCGACGCCGTCGAGAAAGC
GCCTGATGCGGGATTTCAAGCGGCTGCAGCATGACCCACCCGCCGGGATCAGCGGCGCGC
CGCACGACAACAACATCATGCTCTGGAACGCCGTCATCTTCGGCCCGGATGATACGCCAT
GGGACGGAGGCACATTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCCAACAAGCCGC
CAACTGTTCGTTTTGTCTCTAGGGTGTTTCACCCAAATAGTAATCTCTCCCACTATTTTA
TGCAGATGGGAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCCCTATATATGACGT
TGCTGCCATATTGACTTCTATTCAGTCCTTGCTGTGTGATCCAAACCCCAACTCTCCAGC
AAATTCGGAAGCTGCCAGAATGTTCAGTGAGAACAAGCGAGAGTACAACCGTAAAGTCCG
TGAGATCGTGGA

Homology of Contig U35_14609 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07240.2	153	2e-76	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi1g56510.1	153	8e-78
Arabidopsis v10	AT2G02760.1	152	3e-74	\| Symbols: ATUBC2, UBC2 \| ubiquiting-conjugating enzyme 2 \| chr2:774271-775149 FORWARD LENGTH=152