- Probe CUST_10956_PI390587928
- Source Contig U35_14610
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10956_PI390587928 | Hv_44K_v2 | TGGTGAACTAAGGCATGCTAGCCATTGTAAAGATTTTATATATAGCTAAGAAGTTGTTGC | 744 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.321 | 0.419 | 0.790 | 1.435 | 1.281 | 1.660 |
| Raw | 3060.777 | 6274.680 | 10423.857 | 28685.733 | 9216.733 | 13105.930 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361071 | 3449 | 2e-24 | 699 - 758 | 100 | 60 / 60 | minus | ABC02665 ABC02666 ABC02668 ABC04654 ABC07801 |
| MLOC | AK252586.1 | 835 | 2e-24 | 737 - 796 | 100 | 60 / 60 | plus | ABC02665 ABC02666 ABC02668 |
| MLOC | MLOC_15202.3 | 1520 | 3e-22 | 959 - 1017 | 98 | 59 / 60 | minus | ABC02665 |
| MLOC | MLOC_15202.2 | 2413 | 3e-22 | 1822 - 1880 | 98 | 59 / 60 | minus | ABC02665 |
| MLOC | MLOC_15202.1 | 3258 | 3e-22 | 2668 - 2726 | 98 | 59 / 60 | minus | ABC02665 |
| JLOC1 | JLOC1_10417.1 | 3389 | 1e-22 | 2668 - 2726 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC49538 | 670 | 3e-25 | 86 - 145 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC02665 | 887 | 3e-25 | 741 - 800 | 100 | 60 / 60 | plus | ABC02665 |
| Harvest35 | U35_47942 | 670 | 3e-25 | 86 - 145 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_14610 | 839 | 3e-25 | 745 - 804 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_48080 | 299 | 1e-23 | 59 - 118 | 98 | 59 / 60 | minus |
Contig Sequence (839 bp)
>U35_14610 839 Hv_44K_v2 TCCCCCACGCGCACGCCCACCTCCGCACCGACGAAGCTTCCGCCCCGCACCACCAGCCCG GGGAACCCATCGAGAGGCGGCGGCCGCTCCGGGAGCGAGGGATCGGGAGGAACGGGGCCA GGCGGGGGCTCGGAGATGTCGACGCCGGCGAGGAAGCGCCTGATGCGCGACTTCAAGCGC CTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGCACGACAACAACATAACGCTC TGGAACGCCGTCATATTCGGGCCCGATGACACGCCGTGGGATGGAGGTACGTTCAAGCTG ACCCTGCAATTCACAGAAGATTACCCCAACAAGCCACCAACTGTTCGGTTTGTCTCAAGG ATGTTCCACCCAAACATCTATGCAGATGGAAGCATCTGCTTGGATATCCTACAGAACCAG TGGAGCCCTATATATGATGTTGCAGCAATATTGACCTCTATCCAGTCCCTGCTGTGCGAC CCGAATCCGAATTCTCCAGCCAACTCCGAAGCAGCCAGAATGTACAGCGAGAACAAGCGC GAGTACAACCGCAAGGTGCGTGAGGTCGTGGAGCAGAGCTGGACAGCGGACTAGCGTCAC CAGGTCCTGCAATAAGCGATGCCCGGAACGTCTCCATTTCTGGCTTTGCTGGTCTGTACC ACCGAACTAAAACATTAAAAAACCCATGGCCGTTGTGTCCCTGTGCTTGATCTCCTGTTG TTTTTTCAGTGCGTGTGACCTGTTTGGTGAACTAAGGCATGCTAGCCATTGTAAAGATTT TATATATAGCTAAGAAGTTGTTGCAACTTGCTAGTTTTTTAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_14610 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g07240.2 | 153 | 1e-105 | protein|ubiquitin-conjugating enzyme, putative, expressed |
| Brachypodium v1_2 | Bradi1g06090.1 | 153 | 1e-105 | |
| Arabidopsis v10 | AT1G14400.1 | 152 | 6e-103 | | Symbols: UBC1, ATUBC1 | ubiquitin carrier protein 1 | chr1:4927294-4928136 REVERSE LENGTH=152 |