barSeed - Barley Seed Development Database

Probe CUST_10955_PI390587928

Source Contig U35_14611

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10955_PI390587928	Hv_44K_v2	GTGGCAATGTTAGTTTGTGATTGCCCAGCGACACATTTCATTTAGATGATCGTTGCCAAA	876	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359426	997	9e-22	880 - 938	98	58 / 59	plus	ABC02665 ABC02666 ABC02668
MLOC	MLOC_79729.2	1593	9e-22	1462 - 1520	98	58 / 59	plus	ABC02666 ABC02668
MLOC	MLOC_79729.3	732	9e-22	447 - 505	98	58 / 59	plus	ABC02666 ABC02668
JLOC1	JLOC1_53095.1	614	5e-22	486 - 544	98	58 / 59	plus
Harvest21	ABC02668	944	2e-22	876 - 930	100	55 / 55	plus	ABC02668
Harvest35	U35_14611	950	3e-25	877 - 936	100	60 / 60	plus

Contig Sequence (950 bp)

>U35_14611 950 Hv_44K_v2
GCCCGCACATTCTCTCTCTGGACGCAACTAGCCCTAGCGAGTTGCGGCGAGAGTGAGTGC
GTACGTGAGCCCTAGCGGGTTCGAGGAGGCAGCGCCGGCGGCGGAGATGTCGACGCCGTC
GAGAAAGCGCCTGATGCGGGATTTCAAGCGGCTGCAGCATGACCCACCCGCCGGGATCAG
CGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATCTTCGGCCCGGATGA
TACGCCATGGGACGGAGGCACATTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCCAA
CAAGCCGCCAACTGTTCGTTTTGTCTCTAGGGTGTTTCACCCAAATATTTATGCAGATGG
GAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCCCTATATATGACGTTGCTGCCAT
ATTGACTTCTATTCAGTCCTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAATTCGGA
AGCTGCCAGAATGTTCAGTGAGAACAAGCGAGAGTACAACCGTAAAGTCCGTGAGATCGT
GGAGCAGAGCTGGACTGCTGACTAAGGCAGGGGAAGGGGGCCATTGCCAGAAAGTTGCAA
TAAGCAACCATGAAACCTTTATTTATGGCCCTCAATAGTTGTTTCTCAGATGAAACATTA
AACATCTCCAGTGATTGCTTGGTAGGTCAAAGTATCTTTAGTGGTTGGTTCTCCGTGGTG
ATTTTGTGCTGTGTCTCGTGGTACTGCTCTTTTATGTTGTATTGTCGATCCTGCCTTGTG
AATTTAGGGGCATCCTATCCTATGTAAAAAGTTATAGCGTCGAAATGGTTGATGAACACC
TGTCATGTATTGTTACTAAAAAAAAAAAAAAAACGTGTGGCAATGTTAGTTTGTGATTGC
CCAGCGACACATTTCATTTAGATGATCGTTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14611 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07240.2	153	7e-108	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi1g56510.1	153	1e-109
Arabidopsis v10	AT2G02760.1	152	8e-105	\| Symbols: ATUBC2, UBC2 \| ubiquiting-conjugating enzyme 2 \| chr2:774271-775149 FORWARD LENGTH=152