barSeed - Barley Seed Development Database

Probe CUST_10954_PI390587928

Source Contig U35_14612

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10954_PI390587928	Hv_44K_v2	GTCAATGTGATCGTTTCTATTGTACTACTAGCATTGTTGCAAAACAACCTTTTGTGCTAA	1278	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.053	1.016	1.367	1.104	0.422	0.403
Raw	1446.430	2244.179	2555.200	3184.540	431.490	452.698

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64350.2	2300	6e-24	2174 - 2232	100	59 / 59	plus	ABC00330
JLOC1	JLOC1_42249.1	1159	3e-24	1036 - 1094	100	59 / 59	plus
Harvest35	U35_14612	1353	3e-25	1279 - 1338	100	60 / 60	plus

Contig Sequence (1353 bp)

>U35_14612 1353 Hv_44K_v2
CCCGCATTCCCCCTCCACTCCCACGCGCACCGGCACCACCCCTTTTCCTGCGGAGCAGCG
CGAGGGTTTCGGGGAGAGAGAAAGCTAGCCATGGCGGAGCAGCCGCACGCCGAGGACGCG
GGCCACAAGCCGGAGACCCTGATGGAGAAGATCGCCGACAAGCTCCACGTCGGCGGCGGC
GGCGACCACCACTCCTCCTCCTCGGACTCCGACCACGACGAGCGCCCGCGCCCCTCGGCG
CCGCCTGCCCCCGCCCCCGCCCCCGCCGCCTCCGAGGTCACCACCGCCTCCTTCGCCAGC
TCCGCCTCCGCGGCCGCGGCCGACGCCAAGAACAGGATGTTTCGCCTCTTCGGCCGCGAG
CAACCCATCCACAAGGTCCTCGGCGGAGGCAAACCTGCTGACGTGTTTATGTGGAGGAAC
AAGCACATCTCTGCTGGAGTACTAGGTGGTGCAACTGCAATCTGGATCCTTTTTGAATTG
CTTGGCTACCATCTTCTGGCTTTCCTTGGCCATGCTCTCATATTCTCTCTGGGTGTTCTC
TTTCTCTGGTCTAATGCCTCGTCATTCATCAACAAGTCTCCCCCAAGGATTCCCGAGGTG
ATCATTCCTGAAGATTTGGTTGTCAACATTGCGCTCTCTACACGTCATGAGATCAACAGA
GCCTTCGCAAACCTTCGTCAGATTGCTCTTGGGCGTGACATAAAGAAGTTCCTTATTGTG
ATTGCTGGTCTATGGCTGCTTTCCATTCTTGGGAGTTGCTGCAACTTCTTGACACTGTTC
TACATTGTTTTTGTGGTTCTTCACACAGTTCCAGTAATCTACGAGAAGTATGAGGATCAG
ATTGATACCTATGGTGAGAAGGGGTGGATTGAGGTTAAGAAACAGTATGCTGTGTTTGAT
GCCAAGGTTCTGAGCAAAGTGCCGAGGGGCCCCTTGAAAGACAAGAAGAACTAGAAACGA
GTGAATACCGTATGCCATCGGTTTGGAATGATGGCGACTGGTTCGTGACTGCCCTTGTGG
TATGAACACCAAGTTTCTCACCAGTTGTCTCGTGTTATGTAAGGCTGTTTTCAGACTTGT
TTGCGACTTTGATGAGAGTAGCCTGGGTAGCTTACCCTCCAACAGTAATGCAGAGGCAGC
ACTTGTTTAGCTGTACCACTGTTTGATTTTTGATCTGTTAAATGTCGCATGGGTACGGTT
TCTAGACGCTGATTTTGCTACTTGCATTGCTGCAATTTGGAGTATTGATGATGTTTATCA
ACTCAAAAAAAAATAAATGTCAATGTGATCGTTTCTATTGTACTACTAGCATTGTTGCAA
AACAACCTTTTGTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14612 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g12650.1	280	1e-133	protein\|reticulon domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g07510.1	287	3e-147
Arabidopsis v10	AT4G23630.1	275	2e-97	\| Symbols: BTI1, RTNLB1 \| VIRB2-interacting protein 1 \| chr4:12318070-12319574 FORWARD LENGTH=275