- Probe CUST_10950_PI390587928
- Source Contig U35_14616
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10950_PI390587928 | Hv_44K_v2 | TCTGCCTATCTGTGATACAGATGGTCCGTAGCTAATAATGACATGACGTAATTTGTGATG | 455 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.611 | 0.619 | 0.873 | 1.107 | 1.445 | 2.058 |
| Raw | 54509.133 | 85235.767 | 106931.300 | 192734.333 | 94323.900 | 149687.000 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_42334.2 | 1314 | 4e-23 | 573 - 632 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01752 | 636 | 3e-25 | 451 - 510 | 100 | 60 / 60 | plus | ABC01752 |
| Harvest21 | ABC01750 | 534 | 1e-23 | 415 - 474 | 98 | 59 / 60 | plus | ABC01750 |
| Harvest35 | U35_14616 | 616 | 3e-25 | 456 - 515 | 100 | 60 / 60 | plus |
Contig Sequence (616 bp)
>U35_14616 616 Hv_44K_v2 CGGGGATTTCCTCACGCCTTTCCCCTCCTTCCGTCCTTCCTCGCCCCACCGTCGTCGCGG CTCCAGCTAGGGTTTCTCGCCCCCGCCGGGCCCGTCCGCCATGTCGAAGCAAGGAGGGAA GGCCAAGCCGCTCAAGCAGGCCAAGGTCGCCGAGAAGGACTACGACGAGAATGACCTGGC ATACCTCCAGAAGAAGAAGGATGAGCAAAAGGCCCTGAAGGAGCTGAAGGCCAAGGCTGG CCAGAAGGGTGCGCTGGGAGGATCTGGTCTGAAGAAGAGTGGGAAGAAATGAGTCTGCCT GCCCATTCGTAATGCCCAGAAAATGATAATCTATCTATCTACCTATCTGTGTCGCGCTTC ACTATCTGTGGTTGTAACAGACTACCTTCAGTTGTGTTGAGCATTATGCATCGTCGCAGT CGGTTGCTGAAACCTATGGTATTCCAGCAGCCTCTTCTGCCTATCTGTGATACAGATGGT CCGTAGCTAATAATGACATGACGTAATTTGTGATGAAAAAAAAAAAAAAAAATGCATCAA AAAAAAAAAAAAAAAAATGTTGATTGCTTGCTTGCTCTGGTGTTTGAAGCTTCTTCCACT TGAAAAAAAAAAAAAA
Homology of Contig U35_14616 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |