barSeed - Barley Seed Development Database

Probe CUST_10946_PI390587928

Source Contig U35_14621

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10946_PI390587928	Hv_44K_v2	TCTACGTGTGTGTTTCCTCGTGAGGATTGAACATTAGTTATATGGTAAATACGCAAAAAA	1359	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.458	1.429	1.075	0.740	0.289	0.241
Raw	628.273	953.323	638.310	682.755	94.775	86.796

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13532.1	2168	9e-22	2114 - 2168	100	55 / 55	plus	ABC12861
JLOC1	JLOC1_9174.3	2256	1e-22	2060 - 2115	100	56 / 56	plus
JLOC1	JLOC1_9174.2	2270	1e-22	2074 - 2129	100	56 / 56	plus
JLOC1	JLOC1_9174.1	2312	1e-22	2116 - 2171	100	56 / 56	plus
Harvest35	U35_14621	1430	3e-25	1360 - 1419	100	60 / 60	plus

Contig Sequence (1430 bp)

>U35_14621 1430 Hv_44K_v2
GGTACGGACTTACGGAAAACCACCGGTTTCTCGTGGAGGTCAGTCAGTGACTCTTGTTGG
AACAACTCTAGTTGTGTTCGGTGGCGAAGATGCAAAGCGATGTCTTTTGAATGATTTGCA
CATTCTTGATCTTGAAACCATGACATGGGATGATGTGGATGCAATAGGCACCCCTCCTGC
TCCCAGATCAGACCATGTTGCTGCTTGCCATGCTGACCGCTACCTTCTAATTTTTGGCGG
GGGATCTCATGCGACATGTTTTAATGACCTACATGTCCTTGATTTGCAGACGATGGAATG
GTCAAGACCCAAACAGCAGGGTCCAATTCCAAGCCCACGTGCTGGTCATGCAGGTGCAAC
TGTTGGGGAGAATTGGTACATTGTTGGTGGTGGCAATAACAAAAGCGGTGTCTCTGAGAC
ACTTGCGCTTAACATGTCAACTCTGGCATGGTCAGTTGTTAGTACCGTAGAAGGACGTGT
TCCTCTTGCCAGTGAGGGCATGACTTTATTGTACAGCAATTATAGCGGAGAAGATTATCT
CATTTCTTTTGGAGGATACAATGGACGGTACAACAATGAGGTGTATGCTCTTAAACTTAG
TGTAAATTTAGATTTGCAGTCGAGCACACAGGACCAAGCCACCTCAGATAGTACGTCTAG
GGTGCTGGAACCTGAGGTTGAAATTTCTCAAGATGGGAAGATACGGGAGATTGCCATGGA
CAATGCTGATTCGAAAAACAGAAATGATGAAGCAAATGAACAACTCTTGGCAGCCCTTAA
AGCTGAGAAAGAGGAACTAGAGGCAACACTTAACAGGGAAGGGCTGCAAACTGTACAGCT
TAAAGAAGAGATAACTGAAGCGGAGGCCAGAAATGCTGAGCTGACAAAGGAACTTCAATC
TGTCCGTGGGCAACTTGCTGCTGAGCAGTCGAGATGTTTCAAACTTGAGGTGGACGTGGC
GGAGCTGCGGCAAAAGCTTCAGAGTCTGGATGCACTGGAGAGGGAGGTGGAGCTCCTTCG
AAGGCAGAAGGCGGCTTCCGAGCAGGAGCAGGCGGCGCTGGACGCCAAGCAGAAGAAGCA
AGCTGGCTCAGGTGGCGTGTGGGGCTGGCTTGTCGGAACCCCGCCTGACGACGATGATTC
CGAGTCGTCGTGATAGGGCAGGCAAATTCATTCATTCATGCTTCTTTCTCCTTCCTTCCC
CCATACATATACTATATATACACAGGCAGCGATCAGTTGGTATACTTGCTTGTACTCTAC
AGTAATTCTATTCTACAAACAAACGTACTACTACTTGCCATTTGATGATTTGTCCACCCG
GCAATTTCTTCTCCATTTCATTTGAGGACAAATCAATAATCTACGTGTGTGTTTCCTCGT
GAGGATTGAACATTAGTTATATGGTAAATACGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14621 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g61930.3	541	0.0	protein\|ACBP4, putative, expressed
Brachypodium v1_2	Bradi1g02597.1	663	0.0
Arabidopsis v10	AT3G05420.2	669	7e-151	\| Symbols: ACBP4 \| acyl-CoA binding protein 4 \| chr3:1561880-1567047 FORWARD LENGTH=669