barSeed - Barley Seed Development Database

Probe CUST_10935_PI390587928

Source Contig U35_26602

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10935_PI390587928	Hv_44K_v2	CTCTATGTAAAGGACACGGAGATATATATGTAAAGGCGTCCCGTAGAACTAGAAGCAAAG	767	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361846	925	7e-23	778 - 838	98	60 / 61	plus	ABC09479 ABC21479 ABC46705
MLOC	MLOC_28183.5	774	7e-23	46 - 106	98	60 / 61	minus	ABC09479 ABC21479
MLOC	MLOC_28183.4	922	7e-23	76 - 136	98	60 / 61	minus	ABC09479 ABC21479 ABC46705
MLOC	MLOC_28183.2	697	7e-23	86 - 146	98	60 / 61	minus	ABC09479 ABC21479 ABC46705
MLOC	MLOC_28183.3	808	7e-23	77 - 137	98	60 / 61	minus	ABC09479 ABC21479 ABC46705
MLOC	MLOC_28183.1	786	7e-23	86 - 146	98	60 / 61	minus	ABC09479 ABC21479 ABC46705
JLOC1	JLOC1_18943.1	712	4e-23	553 - 613	98	60 / 61	plus
Harvest21	ABC21479	887	3e-25	61 - 120	100	60 / 60	minus	ABC21479
Harvest21	ABC09480	867	1e-23	716 - 776	98	60 / 61	plus
Harvest21	ABC09479	952	6e-22	801 - 858	98	57 / 58	plus	ABC09479
Harvest35	U35_26602	887	3e-25	768 - 827	100	60 / 60	plus
Harvest35	U35_18554	867	1e-23	716 - 776	98	60 / 61	plus
Harvest35	U35_18553	952	6e-22	801 - 858	98	57 / 58	plus

Contig Sequence (887 bp)

>U35_26602 887 Hv_44K_v2
GTGCATCGTGGAGGTACCGAATTCTAGAGTTATGTGGGGATCCCAATAAGCACATCCCAA
GCATCTCTCTAGATATTAACAATTAACAAATCTTTGCCATTCACTGCCGCCGCAAGTGCA
ACACGGAAACCTCTGAAAATATTTCGTCCCGCCTGACGTTCTTTCAGGTGGTGGAAGGCG
GCGAAATGCTGTCTCCGAAAAACGAAGTGGAAAAGGAAAAGCTTAAAAGGGTGTGTGCAC
AGCTCTCTAGCTCAGTCCATTCACAATTTCCACCAAATGTCCAATGCATTTACCGAGAAG
AGAAATAATAGCAGTAACAGTGCAACTTTGTGCTAAAACTCTGAACGCTGGCCGATTTTC
AGAAACCCAAGTCATGGAGACTGGCGTGCCAGGCCACGGTTGGCAACCCAGATTCAACAG
GACAGGTTGGTATCATTGTTGCAAATATATAGACTTGCATTCTGCTTTCTCAACACCCCA
AATACGCAAGTGTTCCATTGCCTTTTGTTTGTCAGGTTGAAATCATTAACATTAACACGC
TAACATCATGGGCTTGAATGATTCTTTATTCCGTATATGTAGATGGTCATACAGCAGCTA
CCAGAGTGGAAGGTGCACAAGTGGGACAAGTGACCGTCGTATAACATTATGATGATTATG
CGGTGGGCCTCATGACCCCGGAAGAATTAAGCAGGAGCTACATGCACATGCACTTGGTCA
GAAGGAGAAGAACCAGACGCTGTCTGTTGGTGAAGCCTCAACGAGGACTCTATGTAAAGG
ACACGGAGATATATATGTAAAGGCGTCCCGTAGAACTAGAAGCAAAGGCGCAGTTCGTTG
CGCTCGAACTCAAATGTAAAATAATCCAACATGCTCCAATGCACAGA

Homology of Contig U35_26602 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None