barSeed - Barley Seed Development Database

Probe CUST_10931_PI390587928

Source Contig U35_26606

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10931_PI390587928	Hv_44K_v2	TAAAATTTCAGATTGGTGTGCCTAAGGTGAACGTGCAACAGCTGCTTAAAGCTCAAAAAA	532	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.868	6.737	1.837	0.735	0.310	0.455
Raw	203.470	269.050	57.103	40.327	4.638	8.521

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC23393	598	3e-25	533 - 592	100	60 / 60	plus	ABC23393
Harvest35	U35_26606	598	3e-25	533 - 592	100	60 / 60	plus

Contig Sequence (598 bp)

>U35_26606 598 Hv_44K_v2
CTTCTCCATCTCTCGACACTCTCTCTCCCTCTCTGCAAGCGTGCACGGACGCCATGGACA
ATCCTCCGGCAGCGGCAGCGGCAGCGGCGGCGGCGGTCAACAACATGGCCGATCCACAGG
CAGTGGCAGCGGCCAACAACGTGGCCAATCCTCCGGCGGCGGCGGCACCTGCGGCTGCTC
TAGCAGCGAACGGCGCCGCAGCGCGCGCCGCGCGCCACGCCGCTTGGAAGAAGAAGGACA
AGAAGCTTGCAATCATATCCCTGGCCGTTCTGGCGATCGTCCTAGTTCTGGTTGTGGTGC
TGTGCCTCCAACCCTGGAAGAAGTAGAGAACCTATATGCATCCATAACCCTCCTGCACAC
ATGCGCGGCGTGCTCTGAGTAGTACTTTTGTGAGATCGAGCGACCTGATCGTGGGCGCGG
TGAAGGAGTAACTACTACTCTATGTCCAATCTATGGAGTTTCTTCTTCGTACCATGTAGC
ACGTACTTTGTTCTTCGTACCATCTATGTACCTAGATCATTGCGAACCAAAGTAAAATTT
CAGATTGGTGTGCCTAAGGTGAACGTGCAACAGCTGCTTAAAGCTCAAAAAAAAAAAA

Homology of Contig U35_26606 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None