barSeed - Barley Seed Development Database

Probe CUST_10925_PI390587928

Source Contig U35_14633

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10925_PI390587928	Hv_44K_v2	AGCAAGACACTCGCGGCTTTGCATGGACACGTCCTGGCATTTAAAACTTTATTACTCACT	1275	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.169	2.140	1.150	0.863	0.419	0.468
Raw	1508.407	2269.897	1100.775	1280.662	220.379	267.600

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_34496.1	975	8e-25	792 - 851	100	60 / 60	plus
Harvest21	ABC07964	1344	3e-25	1265 - 1324	100	60 / 60	plus	ABC07964
Harvest35	U35_14633	1364	3e-25	1276 - 1335	100	60 / 60	plus

Contig Sequence (1364 bp)

>U35_14633 1364 Hv_44K_v2
GATACAGGCTCGTCATTTCGTCGAACACGTGGTAGTACGTCGCACCGACCCTTCGGCAAT
GGCCTCCTTCCTCGTCGCCCGCCGCCTTCTCTCCACTGCCGCCGCCCGGCGCCTCCTCCC
GTGCACTTCCCCGCCACCTTCTGCCCCCGCCGCTCTCTGCTGGCTGTCCACCGAGGCCTC
AGCCCACCCGCCTCTTCCCGCGCCCCCTCTGGAGCCCACAGTCGACCCCCCCAAGAAGGA
TGGAGCCTCCTTCTCCGCCGGTTCCGGCGCTGGAGGGGCCTACGGGACCGGGCAGGGAGC
TGCATCGGGGGGTCGCCGCCCTGGTGGCGCGGGGTACGAGGAGGAGCAGCAGAAGGTCCT
CCGCGCGTCGCTTCTCCACGTGCCGAGGATGGGATGGAGCGAGTCGGCCATGATCGCGGG
TGCGAGGGACGTGTCCGTGTCGCCGGCCATCGTTGGTGCCTTCCCAAGGAAGGAGGCTGC
GCTAGTTGAGTTTTTCATGGATGACTGTCTTCAACAACTCATGGATCGCGTTGATGCTGG
TGAGGGAGAGCTTTTGAAGAACTTGATGCTCACTGAGAGATTATGCAGACTTGTTCAGAT
GAGGCTTGAGATGCAGACACCTTACATTTCAAAGTGGCCTCAAGCGCTGAGCATTCAGTC
CCAACCAGCAAATGTCTCGACAAGCTTAAAGCAGAGAGCAGTCCTTGTGGATGAGATTTG
GCATGCTGCTGGAGATGATGGATCAGATATTGATTGGTATGCAAAACGTACTGTGCTTGG
TGGCATCTACTCAGCTTCAGAAGTGTACATGTTAACAGATAATTCTCCAGAGTTTCACGA
CACATGGACATTTGTGAATCGCGGCATCAAAGGTGCTCTTGATTTGGGGAAATCTTATAA
GGAGGCCGCGTATCTTGCTGAAACCGTGGGAGCAGGGATCGGTGGCTCCATAAATGGCGT
CCTGAACAAAGTTTTCCAGAAATGAAGAACCGCATGAACTTGCCTTTGCAGGCTGCATTC
TCGACATTCCCTCTACCACTTTCTTATGTCACGTTAAGATTCTATGACATTGTATATAGT
AATATATACCTCCTTATAAACAAACCCTCTTAGGGTAGACTTGTCCGCGTAGCCGAGAAG
TTATTTAGTCGGTGGTCAGAGGTCATTTGAGCTGTTGATTAGTCATCATTGCGTAATTCT
GCTACAGGTTGGAGAAAAAAAAAGTGTGAGCTCTACATACTCTAGTCCATGTGTGACCTG
AGTTGCTGCAAACAGAGCAAGACACTCGCGGCTTTGCATGGACACGTCCTGGCATTTAAA
ACTTTATTACTCACTCTTATTAAAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14633 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g29180.1	324	2e-128	protein\|ubiquinone biosynthesis protein COQ9, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g60270.1	309	2e-130
Arabidopsis v10	AT1G19140.2	312	1e-92	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr1:6611026-6612414 REVERSE LENGTH=312