barSeed - Barley Seed Development Database

Probe CUST_10924_PI390587928

Source Contig U35_14634

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10924_PI390587928	Hv_44K_v2	AGAGGTCGATTTCCCTCAAGATTCATGTGTGCACAATGATTAAGAAATCTTAGTAATAAC	913	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.162	5.120	1.212	0.705	0.205	0.364
Raw	2199.550	3052.495	592.971	597.662	55.165	109.482

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_35102.1	1427	1e-22	1117 - 1176	98	59 / 60	plus
Harvest21	ABC01604	1093	5e-23	935 - 994	98	59 / 60	plus	ABC01604
Harvest35	U35_14634	984	3e-25	914 - 973	100	60 / 60	plus
Harvest35	U35_14635	1162	5e-23	980 - 1039	98	59 / 60	plus

Contig Sequence (984 bp)

>U35_14634 984 Hv_44K_v2
GCACGAGGGTAACTAGCTAGGGTTTTCGCGTCTAACCAAGACCTCTCTCTCGGCTCTCGC
GCCCGCTCGACCAGCGCGGATGGGAAAGGACGGGAAGGGGAAGGAGGCCAAGGGGAAGGG
CAAGCAGGCGGCCGGCTCCTCCGACGACGCCGGAGGCGGCAAGGGAGGCAAGGGCAAGGG
CAAGGGCGGCAAGGGAGGCGACGACCTCGGCACCTGCACCTTCGTCAAAGCTAGGCACGT
GTTGTGCGAGAAGCAGGGGAAGATCAATGACGCGTACAAGAAGCTGCAGGAAGGCTGGTT
GGACAACGGGGACAAGGTCCCTCCCGCTGAGTTTGCCAAGGTAGCCCAAGAATTCTCTGA
ATGCCCGTCAGGAAAGAAAGGTGGGGATCTTGGATGGTTCCCACGTGGTAAAATGGCTGG
TCCTTTCCAGGAGGTTGCGTTCAACACACCCGTGGGAGCTACTAGTGCACCATTCAAGTC
TACGCACGGGTACCACTTCATCCTCTGCGAAGGCAGGAAGAACTGATATGAAAGTATGCT
TCAGGTTTGGAGTGCAAGCACCTTGGGATAATATGGGATGCAAATGCCCCCATGTCTTGT
CTGTTGACTCAATAAGCCTTGTGCCTGGACATGTGTATTCAAGCTACTATTATACTGTCC
CAAACCAGAGTGACTCAGAAATTGTGCTTGCTACAAGTAACCTGATATGATATACAGTAT
ATGTTTGGGATAAGAGGTGGTCCAAGGGCGCCAAGAAGTTCGTCGAGAACGCCGCAGGAT
CCTTCAGTGTCGCATAAATATACATGACCGATCGGCGAATTTAATGGAATCTCCTCAGGG
AAGCACCGTGTAGAGACCGATCCAGGGCATGCATGTGTGTTTCTTTGATTTGTACATGAG
GATGGATGAACTAAGAGGTCGATTTCCCTCAAGATTCATGTGTGCACAATGATTAAGAAA
TCTTAGTAATAACGTTTCATTTTT

Homology of Contig U35_14634 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g24540.1	149	5e-72	protein\|peptidyl-prolyl cis-trans isomerase, putative, expressed
Brachypodium v1_2	Bradi4g30050.3	149	3e-75
Arabidopsis v10	AT1G26550.1	142	2e-68	FKBP-like peptidyl-prolyl cis-trans isomerase family protein \| chr1:9171800-9172716 FORWARD LENGTH=142