barSeed - Barley Seed Development Database

Probe CUST_10923_PI390587928

Source Contig U35_14635

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10923_PI390587928	Hv_44K_v2	GCGCTTCAGTTTAGTGTTGTGAAGAATGTTTTCTCAGTCTACTCCCTCCTATCCAAAAAA	1091	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.325	4.878	1.273	0.877	0.486	0.520
Raw	116.585	168.008	37.225	41.455	7.745	8.876

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_14635	1162	3e-25	1092 - 1151	100	60 / 60	plus

Contig Sequence (1162 bp)

>U35_14635 1162 Hv_44K_v2
TCCGGTCCGGAATTCCTTTTTCACTGGTGGCCTAATGCACGCACGCACAGTCCTAGCTAA
GCTAAGCTAAACAGCAGCGAGCAATGGCGTCCACCTCCTGCTTCCTCCACCAGTCCACCG
CGCGCCTGGCTGCCTCGGCGCGCCCTGCTCCCGCCGTCGGGCGCACCCAGCTGTTCGTCT
GCAAGGCGCACAAGAATGACGAGGCTGCATCTGACGCTGCTGTCGTCACCAGCCGGCGCG
CCGCGCTGTCCCTCCTCGCCGGTGCCGCCGCCGTCGCCGTCAAGGTCTCTCCCGCCGCTG
CCGCCTACGGAGAAGCAGCGAACGTGTTCGGCAAGGCGAAGAAGAACACGGACTTCGTGG
CGTACAGCGGCGAGGGGTTCAAACTGATGATCCCGGCCAAGTGGAACCCCAGCAAGGAGC
GTGAGTTCCCTGGGCAGGTGCTCCGTTACGAGGACAACTTCGACGCCACCAGCAACCTCT
CCGTTATAATCAACCCCACCACCAAGAAGACCATCACCGACTACGGTTCCCCTGAGGAGT
TCCTCTCCCAGGTCGGCTTCCTCCTCGGCCAGCAGTCCTACGGCGGCAAGACCGACTCCG
AGGGCGGCTTCGAGTCAGACGCTGTGGCGACGGCCAACGTGCTCGAGAGCTCGGCGCCGG
TGGTGGACGGTAAGCAGTACTACAGCATAACGGTGCTCACCAGGACCGCGGACGGAGACG
AGGGAGGGAAGCACCAGCTCATCACCGCCACCGTCGCCGACGGCAAGCTCTACGTCTGCA
AGGCGCAAGCCGGAGACAAGAGGTGGTTCAAGGGCGCCAAGAAGTTCGTCGAGAACGCCG
CAGGATCCTTCAGTGTCGCATAAATATACATGACCGATCGGCGAATTTAATGGAATCTCC
TCAGGGAAGCACCGTGTAGAGACCGATCCAGGGCATGCATGTGTGTTTCTTTGATTTGTA
CATGAGGATGGATGAACTAAGAGGTCGATTTCCCTCAAGGATTCATGTGTGCACAATGAT
TAAGAAATCTTAGTAATAATGTTTCATTTTTGTAAAAAAAAAAAAAAAAAATGTCCTTAT
CTTTGTTGGCAGCGCTTCAGTTTAGTGTTGTGAAGAATGTTTTCTCAGTCTACTCCCTCC
TATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14635 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g04840.1	255	1e-124	protein\|PsbP, putative, expressed
Brachypodium v1_2	Bradi1g58160.1	254	5e-129
Arabidopsis v10	AT1G06680.1	263	3e-102	\| Symbols: PSBP-1, OEE2, PSII-P, OE23 \| photosystem II subunit P-1 \| chr1:2047940-2049186 FORWARD LENGTH=263