barSeed - Barley Seed Development Database

Probe CUST_10918_PI390587928

Source Contig U35_40903

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10918_PI390587928	Hv_44K_v2	ATTGCTGAGAGCACTTGATAATGGAACTGTTGCACAGGCAGCACTCGACGTGTTTTTTGA	377	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371688	2084	7e-23	1036 - 1095	98	59 / 60	plus	ABC21250
MLOC	MLOC_40241.1	1279	7e-23	633 - 692	98	59 / 60	plus	ABC21250
MLOC	MLOC_40241.2	1703	7e-23	615 - 674	98	59 / 60	plus	ABC21250
JLOC1	JLOC1_26297.1	1774	4e-23	633 - 692	98	59 / 60	plus
Harvest35	U35_40903	437	3e-25	378 - 437	100	60 / 60	plus

Contig Sequence (437 bp)

>U35_40903 437 Hv_44K_v2
CGCAATGTCGCCCAGGCCGACGCCTCGCTCAAGTCCGGCAAATGGCAGCGTAGCAAATAT
GTTGGCGTTTCCTTGGTTGGAAAGACAATAGCTATTATGGGCTTTGGAAAGGTTGGTTCA
GAAGTTGCTCGACGCGCCAAAGGACTTGGAATGGATGTCATTGCTCATGACCCATACGCT
CCCGTTGACAGAGCCCGGGCTATCGGTGTAGATCTTGTATCGTTCGACGACGCCATCTCT
ACTGCGGACTTCATATCGCTGCATATGCCTCTAACACCGTCAACAACAAAACTTTTCAAC
GATGAGACGTTTGCAAAAATGACGAAAGGAGTAAGGATTATAAATGTTGCAAGGGGTGGA
GTGGTTGATGAAGAAGCATTGCTGAGAGCACTTGATAATGGAACTGTTGCACAGGCAGCA
CTCGACGTGTTTTTTGA

Homology of Contig U35_40903 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g44460.1	614	2e-84	protein\|D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g31270.1	619	3e-89
Arabidopsis v10	AT4G34200.1	603	2e-77	\| Symbols: EDA9 \| D-3-phosphoglycerate dehydrogenase \| chr4:16374041-16376561 REVERSE LENGTH=603