barSeed - Barley Seed Development Database

Probe CUST_10916_PI390587928

Source Contig U35_26611

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10916_PI390587928	Hv_44K_v2	TCCTTCTATAAACCAAACCTATAGCTTGCTGTCCAAGAACCTAACGTTTATTAAGACAAT	780	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.298	0.269	0.899	1.749	2.169	1.453
Raw	2.910	3.988	20.780	55.560	27.452	20.369

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6476.2	2620	2e-24	1673 - 1732	100	60 / 60	minus	ABC08749
MLOC	MLOC_6476.1	2795	2e-24	1759 - 1818	100	60 / 60	minus	ABC08749
JLOC1	JLOC1_4229.2	3128	8e-25	896 - 955	100	60 / 60	plus
JLOC1	JLOC1_4229.1	3068	8e-25	875 - 934	100	60 / 60	plus
Harvest21	ABC25271	843	3e-25	781 - 840	100	60 / 60	plus
Harvest35	U35_26611	843	3e-25	781 - 840	100	60 / 60	plus

Contig Sequence (843 bp)

>U35_26611 843 Hv_44K_v2
GGGCGGGCTCTCTCTCACCTCTTCTTCCTCCTTTTACCACCCGTGTCCGCGTCCTCTGCG
GGAAGCTTCCAGACATGAGGAGCAGCAGCAGAGTCCGCGGAGGAGGAGGTGGTGGCGGAC
AGGCCGCCGCCTTCCTCGCCGCGCTGCTGTGCGGCCTCCTGCTCTTGCTCGGCGCCGCCG
ACGCGCAGGGCATCCGGCGCCCCACCGCCTACAAAACCCTACGAGGTGATGCTCCCCTTG
TTATCGCCCAAGGCGGATTTTCAGGGGTATTTCCTGATTCCAGCCAGGCCGCCTTTGCTT
TCGCATTGCTTGCCAGCGCACCTGATACAAGCGTGTGGTGCGATGTGCAACTCACAAAGG
ATGGTGTTGGGGTTTGCCTTCGGGATATAAACATGGCAAACTGCACCAATGCCGCACTAG
TCTACCCTGCGAAAAAGAAGAAATATGTTATCGATGGCGTGCCGAAGACTGGATACTTCT
CTCTCGACTTCAACTATTCTGAGGTCCAAACGACTTATTGTTTGATTCCATATATACTAT
CTTTTCTGTGACAGACTTGCAGTCCTATATCAAGCCGCCTTCGGTTTGGTTGAATGTTCA
GCGTGACATCTTCTATACGCAACATGGTTTGAACATGAGAAGATACATTGTTTCCATCCT
AAAGAGTGTCTCTGTGAAGTATATTTCATCACCTGAGTTGGGTTTCCTCAAAAGCATATC
TAAAAGAGTTGGCAGCAGAACGAAGCTTGTGTTTCGCTTTCCTGATAACTTTATGTCTGA
TCCTTCTATAAACCAAACCTATAGCTTGCTGTCCAAGAACCTAACGTTTATTAAGACAAT
TGC

Homology of Contig U35_26611 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39350.1	779	2e-59	protein\|glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
Brachypodium v1_2	Bradi3g39790.1	778	2e-71
Arabidopsis v10	None