barSeed - Barley Seed Development Database

Probe CUST_10908_PI390587928

Source Contig U35_26616

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10908_PI390587928	Hv_44K_v2	TAGGCTGTCCATATATTCCGGTTAATTTTAGGTTTTTCGGTGGATGGCATATATGAAACT	618	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.043	0.118	0.575	1.435	1.684	2.674
Raw	3.379	21.721	95.769	360.257	151.386	266.670

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4967.1	2289	2e-24	1403 - 1462	100	60 / 60	minus	ABC16240 ABC22260
JLOC1	JLOC1_3165.1	948	8e-25	62 - 121	100	60 / 60	minus
Harvest21	ABC22260	678	3e-25	619 - 678	100	60 / 60	plus	ABC22260
Harvest35	U35_26616	678	3e-25	619 - 678	100	60 / 60	plus

Contig Sequence (678 bp)

>U35_26616 678 Hv_44K_v2
TGGCCGTCATACAGCTGCCCACCGTCGCGGCGGGCACCGTGCAGTACATCCGTCTGGAGC
ACGACGGCCACCTCCGGCTCTACAAGTGGCATTGCGGCTCGGGCTGGGCACCGGTGTACG
ACGTGTTGTGCCTCTTTCCAGACGGAGGCTACGCGTACCCAACCGTCTGCGGCGCGTACG
GTGTGTGCACGAACGACACGCAGTGCAGCTGCCCCGACGCGGACAACTTCCGGAGGCCCA
ACCACGGCTTCGTCCCGATGAATCCACCGCCAACGTCGTGCAGCTCCTCGTCATCGCCGA
GGCGGCGCGCTCAACACCGGCTGGTGTCGCTGCCGGACACGGCCTACTTCAACGCCCATG
GCACGGGCATGCGGGCCATGGAGAGGGTGGACGAGAAGGCGTGCAAGAAGGCATGCCTGG
ACGACTGCGCGTGCGCGGCGACGCAGTTCTACTACGGGCCCGACGCCGGCGACGGGTTCG
GCTACCTGCAGTCGGAGGTGTTCTCGCTGCAGGGGAGGAAGGATTGGAAGCGGGAGGTGG
CGGCGTGGTGCGGTGGAGATGACAGCGATGGACTGATGGTGGTGCCCTTCTTAATTGTGG
ACTAGCGCTGGGTTTTTCTAGGCTGTCCATATATTCCGGTTAATTTTAGGTTTTTCGGTG
GATGGCATATATGAAACT

Homology of Contig U35_26616 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None