barSeed - Barley Seed Development Database

Probe CUST_10907_PI390587928

Source Contig U35_26617

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10907_PI390587928	Hv_44K_v2	TGACAAGTACAGAGGCAAGTACGACAGCAGCATCGCGGAGGTGAAGAGCTACTACGCGTC	395	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.465	1.002	0.887	1.148	1.026	1.445
Raw	3.375	15.966	13.162	26.627	8.376	13.225

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375386	1952	2e-24	918 - 977	100	60 / 60	plus	ABC02102 ABC14370
MLOC	MLOC_7950.2	1712	2e-24	399 - 458	100	60 / 60	minus	ABC02102
MLOC	MLOC_7950.1	1042	2e-24	401 - 460	100	60 / 60	minus	ABC02102
JLOC1	JLOC1_5265.2	1037	8e-25	578 - 637	100	60 / 60	plus
JLOC1	JLOC1_5265.1	1562	8e-25	1103 - 1162	100	60 / 60	plus
Harvest21	ABC22546	788	3e-25	396 - 455	100	60 / 60	plus
Harvest35	U35_26617	789	3e-25	396 - 455	100	60 / 60	plus

Contig Sequence (789 bp)

>U35_26617 789 Hv_44K_v2
GACCACGTCAAGTTCGGGCTGCCCATGGCCTTCACGGTGACCATGCTGTCGTGGAGCTTG
CTTGAGTACGGCGGCGACGTGGCGGCCGCCGGCGAGCTCGCGCACGCCCTCGAGTCCATC
AAGTGGGGCACCGACTACTTCATCAAGGCGCACACCAAGCCCGACGAGCTCTGGGCCGAG
GTTGGCGACGGCGACACCGACCACTACTGCTGGCAGCGGCCGGAGGACATGACCACGTCC
CGCCAGGCCTACAAGGTCGACCGCGAGCGCCCCGGCTCCGACGTCGCCGGCGAGACCGCC
GCCGCCCTGGCCGCCGCCTCCATGGCTTTCCGCGAGACCAACCCGCACTACGCCCACCTC
CTCCTCCACCACGCCCAGCAGCTGCTCGAGTTCGCTGACAAGTACAGAGGCAAGTACGAC
AGCAGCATCGCGGAGGTGAAGAGCTACTACGCGTCCGTGAGCGGCTACCACGACGAGCTG
CTCTGGGCGGCGCTCTGGCTGCACCGCGCCACGGGGCGGGCGAGCTACCTGGACTACGTG
GTGGACAACGCGCACGAGTTCGGCGGCACGGGATGGGCCATCACCGAGTTCAGCTGGGAC
GTCAAGTACGCCGGCGTCCAGATCCTCGCCACCCGGCTGCTGCTGCGTGGCGAGCACGAG
GAGCGCCACCGGGCCACGCTCCANGGGTACCGCGCCAAGGCGGAGCACTACCTGTGCGCG
TGCATGGGCAAGAACGCCGCCGCCGAGGACAACGTCGAGCGCAACCCCGGCGGGATGCTC
TACGTGCGC

Homology of Contig U35_26617 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50490.1	554	2e-151	protein\|endoglucanase, putative, expressed
Brachypodium v1_2	Bradi1g44430.1	545	9e-157
Arabidopsis v10	AT2G32990.1	525	7e-117	\| Symbols: AtGH9B8, GH9B8 \| glycosyl hydrolase 9B8 \| chr2:14003361-14005844 FORWARD LENGTH=525