barSeed - Barley Seed Development Database

Probe CUST_10900_PI390587928

Source Contig U35_14645

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10900_PI390587928	Hv_44K_v2	AAACACCTCTGATGGTTGTGCGTGTCTACTCATCAAAAACATGAAAATCAGTTCTCTTGC	538	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.782	4.021	1.213	0.627	0.354	1.175
Raw	1182.878	1597.232	426.711	366.862	68.722	253.943

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354203	1758	2e-24	1697 - 1756	100	60 / 60	plus	ABC01542 ABC01543 ABC02243 ABC47643
MLOC	MLOC_71416.1	865	2e-24	744 - 803	100	60 / 60	plus	ABC02243 ABC33076
MLOC	MLOC_45271.1	242	2e-24	60 - 119	100	60 / 60	minus	ABC02243
JLOC1	JLOC1_47464.1	971	8e-25	761 - 820	100	60 / 60	plus
JLOC1	JLOC1_29391.1	398	8e-25	216 - 275	100	60 / 60	minus
Harvest21	ABC02244	629	3e-25	548 - 607	100	60 / 60	plus
Harvest21	ABC02243	682	3e-25	538 - 597	100	60 / 60	plus	ABC02243
Harvest35	U35_14645	622	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (622 bp)

>U35_14645 622 Hv_44K_v2
CCACGCGTCCACGATCACAAAGCATTCTACCACTAGACCGCACAGGTAAAGCTCGAGCTT
TGCGCTAAGAGAGTTCATCGGCAGCCATGAAGAGCACCAAGCTCGCGGCGATCCTGATCC
TCCAGGCCGTCCTGGTCATGGGGATCCTCTCCCACGTTAACGCCGACTTCTTCCCCAAGT
GCTGCAACAACTGCAGGTCCTTCTCGGGGGTCGACGTCTGCGACGACGCCCACCCCCAGT
GCCCCAAGGGCTGCTCCGCCTGCCGCGTGGTGACCCCGAGCCCTCACAAGACGTTCCGCT
GCGCCGACATGAAGAGCACCGTCGACGGCACCTGCGGTGGCCCATGCAAAAAGCACTGAT
CGCTTCAGGGCTTCAGGCTCGGACGAGGTGTGCCGCCTAGAATAAAGCTCAGATGAGATG
AGCAGTCATCGTGTTGCTATGTTTGTGTGTGGGCCGTGCTATACGGCCAACAATATGTAC
GCTGTTTATCGTCACTGTGTTTTCTCTCTCGAGAAAAAGCTGGTGTTGCTTGTTGAATAA
ACACCTCTGATGGTTGTGCGTGTCTACTCATCAAAAACATGAAAATCAGTTCTCTTGCAA
AAAAAAAAAAAAAAAAGAAAAA

Homology of Contig U35_14645 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None