barSeed - Barley Seed Development Database

Probe CUST_108_PI415269222

Source Contig TA36035_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_108_PI415269222	Hv_44K_v2	TGTAACCTCAGACCGAGTTAATTTGAGCCTCTGGCTTTTGGATGTTTCACTTTTGAGCGG	1336	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.055	2.868	1.475	0.785	0.243	0.215
Raw	6296.243	13419.357	5922.603	5040.590	548.191	526.528

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8078.1	2030	4e-23	1653 - 1709	100	57 / 57	plus
Harvest21	ABC48425	131	1e-23	22 - 78	100	57 / 57	minus	ABC48425
Harvest21	ABC07055	1397	1e-23	1323 - 1379	100	57 / 57	plus	ABC07055
Harvest35	U35_16471	1420	5e-23	1347 - 1402	100	56 / 56	plus

Contig Sequence (1401 bp)

>TA36035_4513 1401 Hv_44K_v2
ACATCCCCACCGCACTCCACACACCCCCGCCGGCCTCACCGCGCACCAGGCTGCCGCTCT
CCACCGTGCCAATGGCGCCCGCCCGAGCAGCCCTCCTCGCCCTCCTCGTGGCCGCGCTGC
TCCCGCCTGCTCTGTCCCGTGGGCAGGGGCGTGGCCCGCACCTGCCCGGGCACGGCCTGG
TCCATCGGCACGGGCCTGGCATCGGTCACCACGCCCACGCGCCGCTCGGCGGTGGCGCCT
GGGCGTCCGCTCACGCCACCTTCTACGGCGGCGGTGACGCTTCCGGCACCATGGGCGGGG
CGTGCGGCTACGGGAACCTCTACAGCACGGGGTACGGCTCCAACACGGCGGCCCTGAGCA
CGGCGCTCTTCAACAACGGCCTCAGCTGCGGGGCCTGCTTCGAGGTGCGGTGCGACCCGG
GCGGCACCGAGGCCGGCGCGCCCCACGCCTGCCTCCCCGGCTCCACCGTGGTGACTGCCA
CCAACTTCTGCCCGCCCAACTTCGGCGAGTCGTCCGACGCCGGCGGCTGGTGCAACCCTC
CCCGCGCCCACTTCGACATGTCCCAGCCCGTCTTCCAGCGCATCGCGCTCTACCGCGCCG
GCATTGTCCCCGTCTCCTACCGCAGGGTGGCGTGCCAGAAGAAGGGCGGCATCAGGTTCA
CGATCAATGGCCACTCGTACTTCAACCTGGTGCTGGTCACCAACGTGGGTGGCCCCGGCG
ACGTGCACGCGGTGTCCGTCAAGTCGACGCGCTCGGCGGCGTGGCAGGCGCTCTCACGCA
ACTGGGGGCAGAACTGGCAGAGCAACGCGCTGCTCGACGGGCAGGGCCTCTCGTTCCGCG
TGACGGCAGGCAACGGCCAGTCCGTGGTCTCCAACAACGCCGTCCCGCGCGGCTGGTCAT
TCGGCCAGACCTTCAGCGGCGCCCAGTTCCACTGAGCGCCTGCATCATCCGCAGACGCAG
TACCATCTGGTTGTAGTAGTGGTTTTAGCGAGTGGTGGTCGTCGTCAACCTCCCGATTGG
AGCGTGCTGGGAAGCGCCATGGTTTTATGGTTGGTCCTTCCTCAGGCATACGTTCGTGGG
GATTCGAGTTAGTAGCAGGTAGTTAGGCCTGGTATTATCATGGGCTTTTAATTGTCCTGG
TGTGGTGTGTGTGCTAGCTGAACATTTGAACGAGGTTTTGGCTAGGATGGCAGCGGTGGT
AAAGGCTGGTTTGATTAACCGATGCCGCCTTGTATCACCCGCCGATTAGCGAATGGGCCT
CTTGGGTAGTGGCCTTTGTCTCGAGGATGTTTTGGTGTGTTCCTTGTTTGTGTGTGTGGT
GTGTGCTTGGCTGTGATGTAACCTCAGACCGAGTTAATTTGAGCCTCTGGCTTTTGGATG
TTTCACTTTTGAGCGGCCGCC

Homology of Contig TA36035_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51040.1	292	5e-134	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi3g59460.1	293	3e-141
Arabidopsis v10	AT2G03090.1	253	1e-109	\| Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1.3, EXPA15 \| expansin A15 \| chr2:917361-918554 REVERSE LENGTH=253