- Probe CUST_10899_PI390587928
- Source Contig U35_14646
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10899_PI390587928 | Hv_44K_v2 | GCTGGTGTTGCTTGTTGAATAAACACCTCTGATGGTTGTGCGTGTCTACTCATCAAAAAA | 514 | GeneList: grey60 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.458 | 3.785 | 1.176 | 0.581 | 0.328 | 1.052 |
| Raw | 1480.170 | 2004.236 | 557.202 | 458.046 | 86.796 | 305.475 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK354203 | 1758 | 6e-24 | 1677 - 1735 | 100 | 59 / 59 | plus | ABC01542 ABC01543 ABC02243 ABC47643 |
| MLOC | MLOC_71416.1 | 865 | 6e-24 | 724 - 782 | 100 | 59 / 59 | plus | ABC02243 ABC33076 |
| MLOC | MLOC_45271.1 | 242 | 6e-24 | 81 - 139 | 100 | 59 / 59 | minus | ABC02243 |
| JLOC1 | JLOC1_47464.1 | 971 | 3e-24 | 741 - 799 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_29391.1 | 398 | 3e-24 | 237 - 295 | 100 | 59 / 59 | minus | |
| Harvest21 | ABC02244 | 629 | 1e-24 | 528 - 586 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC02243 | 682 | 1e-24 | 518 - 576 | 100 | 59 / 59 | plus | ABC02243 |
| Harvest35 | U35_14646 | 672 | 3e-25 | 515 - 574 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14645 | 622 | 1e-24 | 519 - 577 | 100 | 59 / 59 | plus |
Contig Sequence (672 bp)
>U35_14646 672 Hv_44K_v2 CCACGCGTCCGCACAAAGCATTCTACCACTAGACCGCACAGGTAAAGCTCGAGCTTTGCG CTAAGAGAGTTCATCCGCAGCCATGAAGGGCACCAAGCTGGCGGCGATCCTCATCCTCCA GGCCGTCCTGGTCATGGGGATCCTCTCCCACGTGAACGCCGACTTCTTCCCCAAGTGCTG CAACAACTGCAGGTCCTTCTCGGGGGTCGACGTCTGCGACGACGCCCACCCCAAGTGCCC CAAAGGCTGCTCCGCCTGCCGCGTGGTGACCCCGAGCCCTCACAAGACGTTCCGCTGCGC CGACATGAAGAGCACCGTCGACGGCACCTGCGGTGGCCCATGCAAAAAGCACTGATCGCT TCAGGGCTTCAGGCTCGGACGAGGTGTGCCGCCTAGAATAAAGCTCAGATGAGATGAGCA GTCATCGTGTTGCTATGCTTGTGTGTGGGCCGCGTTATACGGCCAACAATATGTACGCTG TTTATCGTCACTGTGTTTTCTCTCTCGACAAAAAGCTGGTGTTGCTTGTTGAATAAACAC CTCTGATGGTTGTGCGTGTCTACTCATCAAAAAAAAAAAAAAAAAGTTCTCTTGCGCAAA AAAAAAAAAAAAAACTCTCCGATCTATATGACATCCATCAATGGCATATTAAGCACGAAA AAAAAAAAAAAA
Homology of Contig U35_14646 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |