barSeed - Barley Seed Development Database

Probe CUST_10891_PI390587928

Source Contig U35_26212

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10891_PI390587928	Hv_44K_v2	GGCAGTAACTAGACGAGATGTATCGATCAACTATTCAGCCAAATATTGATCATTATCAAT	184	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11487.1	5816	2e-24	660 - 719	100	60 / 60	minus	None
JLOC1	JLOC1_7611.1	4414	8e-25	122 - 181	100	60 / 60	minus
Harvest35	U35_26212	283	3e-25	185 - 244	100	60 / 60	plus

Contig Sequence (283 bp)

>U35_26212 283 Hv_44K_v2
CCACGCGTCCGGGTAAATATTCAGGGCTTGTTGTCAGGTACTCGTACTTGCTAAGAGGAG
TTGTAGTGATAAGAAACCCAAAGGCAGAAGATGTACGACTGTCAACATTTATTCATTCCA
TCCTTATTATTACTTTTATTTTCAAGTTAAAGTTACTTTCTGTAACCCCTCATACTATAT
AAGGGGCAGTAACTAGACGAGATGTATCGATCAACTATTCAGCCAAATATTGATCATTAT
CAATACAGTAGTATAACTTTACATACAAAAAAAAAAAAAAAAA

Homology of Contig U35_26212 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None