- Probe CUST_10883_PI390587928
- Source Contig U35_26218
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10883_PI390587928 | Hv_44K_v2 | AATTGGTGTTTGTCCCCAGCATGACTTGCTTTGGGAAAATCTGACTGGACGAGAGCATTT | 460 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.068 | 1.239 | 1.310 | 1.090 | 0.364 | 0.253 |
| Raw | 29.023 | 49.975 | 49.444 | 62.497 | 6.901 | 5.228 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_75332.8 | 2982 | 2e-24 | 884 - 943 | 100 | 60 / 60 | minus | ABC26036 |
| MLOC | MLOC_75332.2 | 3284 | 2e-24 | 896 - 955 | 100 | 60 / 60 | minus | ABC26036 |
| MLOC | MLOC_75332.1 | 3121 | 2e-24 | 897 - 956 | 100 | 60 / 60 | minus | ABC26036 |
| MLOC | MLOC_75332.6 | 3041 | 2e-24 | 884 - 943 | 100 | 60 / 60 | minus | ABC26036 |
| MLOC | MLOC_75332.7 | 2941 | 2e-24 | 884 - 943 | 100 | 60 / 60 | minus | ABC26036 |
| MLOC | MLOC_75332.5 | 2057 | 2e-24 | 884 - 943 | 100 | 60 / 60 | minus | ABC26036 |
| MLOC | MLOC_75332.4 | 1360 | 2e-24 | 1012 - 1071 | 100 | 60 / 60 | minus | ABC26036 |
| MLOC | MLOC_75332.9 | 3182 | 2e-24 | 884 - 943 | 100 | 60 / 60 | minus | ABC26036 |
| JLOC1 | JLOC1_50250.6 | 3125 | 8e-25 | 2156 - 2215 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50250.5 | 3037 | 8e-25 | 2068 - 2127 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50250.4 | 3129 | 8e-25 | 2160 - 2219 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50250.3 | 3462 | 8e-25 | 2493 - 2552 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50250.2 | 2821 | 8e-25 | 1852 - 1911 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50250.1 | 2573 | 8e-25 | 1604 - 1663 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC23571 | 585 | 3e-25 | 461 - 520 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_26218 | 587 | 3e-25 | 461 - 520 | 100 | 60 / 60 | plus |
Contig Sequence (587 bp)
>U35_26218 587 Hv_44K_v2 TATCATTCTATCTGGATCACTTTGGTTCCTTTCAAAGTGGAATTAGAAAAGCAGTATTAC TTCTTCACTCTCGCCGGGCTGGGAACCGTTCTCAATCTGTTGAACAGCAGACCACACAGA TTCAAGAGTTCAAAGCTTCTGTTGAAATGGAGAGGACAGATGTTATCAAAGAGAGAGAGA TGGTTGGACAGCTCTTACAAGAACCAAATAGTAATTATTCAGTCATATGTGACAACCTTA AGAAAGTGTACCCTGGAAAAGATGGCAATTCAAAGAAAATTGCTGTCAGAGAGTTGTCCC TTTCAATGGCACGTGGGCAGTGCTTTGGTGTTCTTGGTCCAAATGGTGCTGGAAAAACCA CTCTCATCAACATGCTCACTGGATTTACTAAACCTACGTCTGGCACCGCGTACATCGAAG GAATGGACATAAGGTTGCACATGGACACAATTTATACAGGAATTGGTGTTTGTCCCCAGC ATGACTTGCTTTGGGAAAATCTGACTGGACGAGAGCATTTGATGTTCTACGGCAGGCTCA AGAANACTGAAGGTGCAAAATTAGCTCAGGCTATTGAACAATCTCTG
Homology of Contig U35_26218 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g11960.1 | 965 | 2e-95 | protein|ABC transporter, ATP-binding protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g08020.1 | 915 | 5e-107 | |
| Arabidopsis v10 | AT3G47780.1 | 935 | 5e-64 | | Symbols: ATATH6, ATH6 | ABC2 homolog 6 | chr3:17624500-17628972 FORWARD LENGTH=935 |