barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_10879_PI390587928Hv_44K_v2CTCATGTCCATGTACTTAACAATTTATTTTACTGCGTGGTTTGAATCCTTCAGTTGTGAT741GeneList: darkolivegreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.2460.4250.8121.4471.3192.096
Raw 219.631621.6781002.4382682.873899.2051571.301



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_60208.19202e-24791 - 85010060 / 60plus ABC03787 ABC03789
JLOC1JLOC1_39239.210458e-25797 - 85610060 / 60plus
JLOC1JLOC1_39239.117008e-251452 - 151110060 / 60plus
Harvest35U35_142428553e-25742 - 80110060 / 60plus



Contig Sequence (855 bp)

>U35_14242 855 Hv_44K_v2
AGCCACTGCCTCCCCTCTCTGCCTCGCCCTATACATAGTATCCAGCTCCAGTACACATCT
CACTGTATCCTACTCAACTGCTCCATCTTCTTCTTCTTCTTCTTCTTCCTCCTGCTCTGC
ATCTCTCTCTTTCTCTCTGCGTGCCGGGTGCCAGACGAGAGGAAGGGAGGATGCCTACCG
CGGGGCTGGCGGCCGGGTCGAACAAGGTGGACGTGGCCATCGACCTCGGCAACCCGCTGC
TCAACCGCACCGTCGACGGCTTCCTCAAGATCGGCGCCGTCGGCGCCTGCAGGGTGGTCG
CCGAGGACGCCTTCGACTGCCTCCACAGAGGGGATATCTCGAAGCGCCAGCTTGAAGAGA
CGCTGAAGAAAATGTGCAAGGAGGGTGCATATTGGGGTGCTGTTGCTGGGGTGTATGTAG
GCATGGAGTATGGAGTGGAAAGGGTCCGTGGTGACCGTGACTGGAAAAATGCGTTGATAG
GAGGCATTGCAACTGGTGCCCTGGTCTCTGCTGCGAGCAACAACAAAGGGAACAAGATCG
CCCAGGACGCCATCACCGGAGGTGCCATCGCGACCGCCGTCGAGTTCATCAACTACCTCA
CCTAGCTGTGAGGCCATATCCGCGGCGATGTTTTTATCGGACAAGACTGAATAAGAACTT
CTTGACTGAAGCCATCCACCCTGTGTGTTAATAATTGGAGCTGTTTCCTCCAATGTTTTT
CCATTTTTTGTTGCCGGCGTTCTCATGTCCATGTACTTAACAATTTATTTTACTGCGTGG
TTTGAATCCTTCAGTTGTGATAAAAAAAAAAAAAAAAACTAGTTTGGTAGCATAGTTTAT
TCAAAGCTCTAGTAG



Homology of Contig U35_14242 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g02060.11475e-75protein|mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
Brachypodium v1_2Bradi2g38750.11453e-76
Arabidopsis v10None