barSeed - Barley Seed Development Database

Probe CUST_10878_PI390587928

Source Contig U35_14243

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10878_PI390587928	Hv_44K_v2	ATATTGTCGTTGTATTTTGGGGTGAATTATGCTAATACTACGTGGCTTCTTTTTTGCTTG	2411	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.177	4.090	1.300	0.676	0.094	0.225
Raw	347.870	761.548	193.971	174.398	7.450	20.111

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_42651.1	2750	8e-25	2484 - 2543	100	60 / 60	plus
Harvest21	ABC01803	2523	3e-25	2388 - 2447	100	60 / 60	plus	ABC01803
Harvest35	U35_14243	2548	3e-25	2412 - 2471	100	60 / 60	plus

Contig Sequence (2548 bp)

>U35_14243 2548 Hv_44K_v2
CTCCAAGAAGAGCACATCACCATCTCCTCCGGCTCTTCTTCGACTCCCCTGCTCCTCTTC
GCAGTTTGCCGGCCACCACCACCACCCACCGAGAAAATGGCAGGCAACGGAGCCATCGTC
GAGAAGGACCCGCTCAACTGGGGCGCGGCGGCGGCCGAGCTCACCGGCAGCCACCTCGAC
GAGGTGAAGCGGATGGTGGCGCAGTTCCGCGAGCCAGTGGTGAAGATCGAGGGCGCCAGC
CTCCGCGTCGGCCAGGTGGCGGCCGTGGCCCAGGCCAAGGACGCGTCGGGCGTCTCCGTG
GAGCTCGACGAGGAGGCGCGGCCCCGCGTCAAGGCCAGCAGCGAGTGGATCCTCAGCTGC
CTCGCCGGCGGGGGCGACATCTACGGCGTCACCACCGGCTTCGGCGGCACCTCCCACCGC
CGCACCAAGGACGGGCCCGCCCTCCAGGTGGAGCTCCTCAGGCATCTGAACGCTGGAATC
TTCGGCCCCGGCGCCGATGGCCACTCGCTGCCGGCGGAGGTGTCCCGTGCGGCCATGCTC
GTGCGCATCAACACCCTCCTCCAGGGCTACTCCGGCATCCGCTTCGAGATCCTCGAGGCC
ATCACCAAGCTCATCAACACCGGCGTCAGCCCCTGCCTCCCGCTCCGGGGCACCATCACC
GCCTCCGGCGACCTTGTGCCACTGTCCTACATCGCCGGCCTCATTACCGGACGCCCCAAC
GCGCAGGCCACCACTGTTGACGGAAAGAAGGTGGACGCCGCTGAGGCATTCAAGGCCGCT
GGCATCGAGGGCGGCTTCTTCAAGCTCAACCCCAAGGAGGGTCTTGCCATTGTCAACGGC
ACGTCCGTTGGCTCGGCGCTTGCGGCCACGGTGCTGTTCGACTGCAACGTCCTCGCTGTT
CTCTCCGAGGTCCTGTCCGCCGTCTTCTGCGAGGTGATGAACGGCAAGCCCGAGTTCACC
GACCACCTCACCCACAAGCTCAAGCACCATCCCGGCTCCATCGAGGCTGCGGCCATCATG
GAGCACATCCTGGCCGGCAGCGCCTTCATGGGCCATGCCAAGAAGGTCAACGAGATTGAC
ACGCAGCTCAAGCCCAAGCAAGACAGGTACGCGCTCCGCACGTCGCCGCAGTGGCTCGGC
CCCCAGATCGAGGTCATCCGGTCTGCCACCAAGTCCATCGAGCGCGAGGTCAACTCCGTC
AACGACAACCCAGTCATTGACGTCCACCGTGGCAAGGCACTCCATGGCGGCAACTTCCAG
GGCACACCCATCGGTGTGTCCATGGACAACACCCGTCTCGCCATCGCCAACATTGGCAAG
CTCATGTTCGCGCAGTTCTCGGAGCTCGTCAACGAGTTCTACAACAACGGGCTGACCTCC
AACCTGGCAGGCAGCCGCAACCCCAGCTTGGACTACGGCTTCAAGGGCACCGAGATCGCC
ATGGCTTCCTACTGCTCTGAGCTCCAGTACCTTGCCAACCCGGTGACCAACCATGTCCAG
AGTGCGGAGCAGCACAACCAGGACGTGAACTCTCTCGGCCTCGTCTCGGCCAGGAAGACC
GCCGAGGCTGTGGACATCCTGAAGCTCATGTCCTCCACATACATGGTGGCGCTGTGCCAG
GCCATCGACCTCCGCCACCTTGAGGAGAACATCAAGACCTCCGTGAAGAACTGCGTGACG
CAGGTGTCGAAGAAGGTGCTGACCATGAACCCTACCGGCGACCTCTCCAGCGCGCGCTTC
AGCGAGAAGAGCCTCATCACCGCCATCGACCGCGAGGCCGTGTTCAGCTACGCCGACGAC
GCATGCAGCGCCAACTACCCACTGATGCAGAAGCTGCGCGCCGTGCTCGTGGACCACGCC
CTGACCGCCGGCCCCGGCGAGGCCGAGAGCGAGGCCACGGTGTTCTCCAAGATCAACAAG
TTCGAGGAGGAGCTGCGGTCGGCCCTGCCGCGGGAGATCGAGGCCGCCCGCGTGGCCTTC
GAGAACGGCACGGCGCCCATCCCCAACCTGATCAAGGAGAGCAGGTCGTTCCCGCTGTAC
CGCTTCGTCCGCGAGGAGCTCGGCTGCGTGTACCTCACCGGCGAGAAGCTGCTGTCCCCC
GGCGAGGAATGCACCAAGGTCTTCCTCGGCATCAGCCAGAACAAGCTCATCGACCCCATG
CTCGAGTGCCTCAAGGAGTGGAACGGCGAGCCCCTGCCCATCAACGTCTGAAGGATCGTC
CGTGCCACCGTGGAGGAGAGGAGGAGGCTTCCAAAGTACATCCAAAAATAAGACGCTTAA
TCCGTTCGTGCATGTTCTTACTTCAGTTCCTGTCGCTTTTGCCTTTACTTGTTCGTGCGT
TGGTGTTGATCGACGTGTGTTGTTAATTGTGTAGCTGCTCAGCCATGGCGGACCCGCAGC
TTTACCTACAGATATTGTCGTTGTATTTTGGGGTGAATTATGCTAATACTACGTGGCTTC
TTTTTTGCTTGTAAAAAAAAAAAAAAAAAATGTTTTGCTTTTACTATAATACAATATATA
TACATACTACAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14243 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g41630.2	702	protein\|phenylalanine ammonia-lyase, putative, expressed
Brachypodium v1_2	Bradi3g49250.2	708
Arabidopsis v10	AT2G37040.1	725	\| Symbols: PAL1, ATPAL1 \| PHE ammonia lyase 1 \| chr2:15557602-15560237 REVERSE LENGTH=725