- Probe CUST_10876_PI390587928
- Source Contig U35_14245
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10876_PI390587928 | Hv_44K_v2 | TGAATAAGAACTTGTTGACTGAAGCCGTCCGCGCTCCGTGTTTAATAACTGAACCCGTTT | 555 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.238 | 0.196 | 0.554 | 1.704 | 2.643 | 5.411 |
| Raw | 1591.197 | 2062.307 | 5333.447 | 24112.267 | 13736.340 | 30746.500 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_3872.1 | 782 | 2e-24 | 141 - 200 | 100 | 60 / 60 | minus | ABC03787 ABC03789 |
| JLOC1 | JLOC1_2329.2 | 871 | 8e-25 | 630 - 689 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2329.1 | 1077 | 8e-25 | 836 - 895 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03789 | 630 | 3e-25 | 553 - 612 | 100 | 60 / 60 | plus | ABC03789 |
| Harvest21 | ABC03788 | 632 | 6e-22 | 551 - 610 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_14245 | 655 | 3e-25 | 556 - 615 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_33324 | 514 | 1e-23 | 210 - 269 | 98 | 59 / 60 | plus |
Contig Sequence (655 bp)
>U35_14245 655 Hv_44K_v2 GTGCCCGACTGCCGAGTGCTAGACGAGAGATAGGGAGGGAGACCGGCCGAGAAGGTTCCG GAACCGGAAGGATGCCTCGCGCGGGGCTGGCGGCGGGGTCGAGCAAGGTGGACATCGCCA TCGACCTCGGCAACCCGCTGCTCAACCGCACCGTCGACGGCTTCCTCAAGATCGGCGCCG TCGGCGCCTGCAGGGTGGCCGCCGAGGACGCCTTCGACTGCCTCCAAAGTGGGAGTGTCT CGAAGCGCAAGCTCGAGCAGACACTGAAGAAAATGTGCAAGGAGGGCGCATATTGGGGTG CTGTTGCTGGAGTGTATGTAGGCATGGAGTATGGAGTGGAAAGGGTCCGCGGACAGTATG ACTGGAAAAACGCGTTGATTGGAGGCATCGCAAGCGGCGCCCTGATCTCTGCCGCGAGCG ACAACAAAGGGAACAAGATCGCCCAGGACGCCATCACCGGAGGCGCCATCGCGACCGCCG TCGAGTTCATCAACTACCTCACCTAGCCGTGCGACCGTACTCAGAGCGGTGTTTCCTTTT TATATCAGACAAGACTGAATAAGAACTTGTTGACTGAAGCCGTCCGCGCTCCGTGTTTAA TAACTGAACCCGTTTCCTCCAAATGTTCTTCCGTTTTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_14245 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g02060.1 | 147 | 9e-65 | protein|mitochondrial import inner membrane translocase subunit Tim17, putative, expressed |
| Brachypodium v1_2 | Bradi2g38750.1 | 145 | 7e-66 | |
| Arabidopsis v10 | None |