barSeed - Barley Seed Development Database

Probe CUST_10863_PI390587928

Source Contig U35_26223

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10863_PI390587928	Hv_44K_v2	GGCATGAATTGAATGCATACAATATACATGATACAAGTAGATGGAAAGATCTGAATCCCA	788	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44210.4	2753	2e-24	1070 - 1129	100	60 / 60	minus	None
MLOC	MLOC_44210.1	2646	2e-24	1158 - 1217	100	60 / 60	minus	None
MLOC	MLOC_44210.3	2545	2e-24	1095 - 1154	100	60 / 60	minus	None
MLOC	MLOC_44210.2	2612	2e-24	1134 - 1193	100	60 / 60	minus	None
JLOC1	JLOC1_28627.3	2587	8e-25	1272 - 1331	100	60 / 60	plus
JLOC1	JLOC1_28627.2	2487	8e-25	1172 - 1231	100	60 / 60	plus
JLOC1	JLOC1_28627.1	2587	8e-25	1272 - 1331	100	60 / 60	plus
Harvest21	ABC21811	853	3e-25	789 - 848	100	60 / 60	plus
Harvest35	U35_26223	853	3e-25	789 - 848	100	60 / 60	plus

Contig Sequence (853 bp)

>U35_26223 853 Hv_44K_v2
AGTCACTGCTAACGAGATGTGGGGCACAATGGTCCAGGGTGGGTGCTTTGACCGAGATAA
TTTCAATGCTGGCCCCAGCATGCCTTCTATAGTGGGTGATACAGTTTGTGCAGCAGTTTC
TGCTTCAACCTGGGTTGAACCACATGGAAGATGTACGGTCGTATTTGCGTTGGCTTGGTC
TTCTCCCAAGGTTAAATTTAAGAAGGGAAGTACGTACCAAAGGAGATATACGAAATTCTA
CGGAACGTCTCCAAGATCTGCTATAAACCTGGTGCAAGATGCCTTGATGAAGTACAAGCA
TTGGGAAGAGGAAATCGATAAGTGGCAGACCCCAATTCTCCGTGATGAGAGGCTTCCAGA
ATGGTACAAAATTACTCTCTTCAACGAGTTATACTTCCTAGTAGCTGGAGGAACTGTTTG
GATTGACAGTGATTTGAGTTCAAGTCTACCTGAGGACAGTGATTTGCCACTTCATAACAG
AACTTGCAACTCTACAGTTCCACTTATTGGTTCTAGCCAACCTGATTTTGATGACAGAGA
AAATGTTGGGAAGTTTTTGTACCTTGAAGGAGTGGAGTACTTCATGTGGTGCACTTACGA
TGTACACTTCTATGCTTCGTTTGCTCTGTTGGATCTCTTTCCTAAGATTGAGCTGAGTAT
TCAACGGGACTTTGCTAGAGCTGTTTTGCGTGAAGATAGAACCAGAGTCAAATTTCTTGC
TGATGGTACATGGGGCACACGCAAAGTAATTGGTGCTGTTCCCCATGATCTCGGAGCACA
TGATCCTTGGCATGAATTGAATGCATACAATATACATGATACAAGTAGATGGAAAGATCT
GAATCCCAAGTTT

Homology of Contig U35_26223 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g26210.1	464	9e-74	protein\|non-lysosomal glucosylceramidase, putative, expressed
Brachypodium v1_2	Bradi1g28847.1	604	8e-176
Arabidopsis v10	AT3G24180.1	950	2e-130	Beta-glucosidase, GBA2 type family protein \| chr3:8735011-8741147 REVERSE LENGTH=950