barSeed - Barley Seed Development Database

Probe CUST_10851_PI390587928

Source Contig U35_38205

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10851_PI390587928	Hv_44K_v2	TCCAAAGGAGATAACCAGCATGCTATAGGTTCCTTATCTCTAGACTTCAAGAGACTCAAA	522	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5108.3	5173	2e-24	3733 - 3792	100	60 / 60	minus	ABC19175 ABC34692
MLOC	MLOC_5108.5	5219	2e-24	3703 - 3762	100	60 / 60	minus	ABC19175 ABC34692
MLOC	MLOC_5109.1	4908	2e-24	3392 - 3451	100	60 / 60	minus	ABC19175 ABC34692
MLOC	MLOC_5108.4	6486	2e-24	5050 - 5109	100	60 / 60	minus	ABC19175 ABC34692
JLOC1	JLOC1_3258.3	3124	8e-25	1454 - 1513	100	60 / 60	plus
JLOC1	JLOC1_3258.2	5131	8e-25	1454 - 1513	100	60 / 60	plus
JLOC1	JLOC1_3258.1	5135	8e-25	1454 - 1513	100	60 / 60	plus
Harvest21	ABC34070	629	3e-25	523 - 582	100	60 / 60	plus
Harvest35	U35_38205	629	3e-25	523 - 582	100	60 / 60	plus

Contig Sequence (629 bp)

>U35_38205 629 Hv_44K_v2
GGTGCTACACTCTGTTTGTACAAGTGGAATTCAGATGCGGCTGCAGAGGTTTTCAACACA
TGTAGAGGAAAACCACAAATTCAGAACCAGTTTCTAAAGCAGAAACTTGTTCTGCAATTT
GATTTTATAAAGAGGGAACTACGACACTTCTTCCCTACAGGGGATGATTGCTCTCCTCAA
ACACATGATAGCAGGAAGAACAGTCTTGTGGTTCCTAACGTATCGACTCAGCCACAACAA
TATTACCTGCCAGCAGTGAAGAGCAAGCTAGTTGACGACCATGAGTTATGTGATTTGCTG
TACAAACAGAAGAGGAGAATAGTCAAGTGGCGACCACAGCGAATTTCTGAAACACCGCGG
AGATCACCACGACTGGCACACTTGAAGAATTCCTGTGGTAGCACAGAGAGCGCATTGAAA
GAAAAACCTGAAGTGTTGGAATCTTCACCATCCAGCACAACAGATCGGGTGGAGGACAGA
ACAGGGCAAGCACATTTACTCTACGAGAAGCCAGATCGTGTTTCCAAAGGAGATAACCAG
CATGCTATAGGTTCCTTATCTCTAGACTTCAAGAGACTCAAAAAAACACTATGGGAGTCG
GTACTAAGTGAGAAGCCTCAGCATCATCA

Homology of Contig U35_38205 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g48597.1	723	6e-74
Arabidopsis v10	None