barSeed - Barley Seed Development Database

Probe CUST_10844_PI390587928

Source Contig U35_14255

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10844_PI390587928	Hv_44K_v2	TCTTCCAAATGTACGAGCCGCTTTTCGTAGTGTTATCCACTCGATTCCCGTGCCAAAAAA	934	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.042	1.230	1.471	1.122	0.364	0.268
Raw	1658.503	3078.279	3215.907	3881.400	438.048	354.561

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4889.1	596	9e-22	315 - 369	100	55 / 55	minus	ABC01361 ABC34343 ABC47231
JLOC1	JLOC1_3101.1	1340	5e-22	282 - 336	100	55 / 55	minus
Harvest35	U35_14255	1005	3e-25	935 - 994	100	60 / 60	plus

Contig Sequence (1005 bp)

>U35_14255 1005 Hv_44K_v2
TCGAGCACTGTTGGCCTCTGGACAGAGCCCGAAGCCAGAGGAAATCCCAATCCGCGCACC
CGAATTCCCAATCCCCCCCAAAACCCTAGCCCCGATCCCGATCCCGATCCCGGCGAGTGA
GATGGCCAACCCGAAGGTGTTCTTCGACATGACGGTGGGCGGCGCCCCGGCCGGCCGCAT
CGTGATGGAGCTGTACAAGGACGCGGTGCCGAGGACGGTGGAGAACTTCCGCGCGCTCTG
CACCGGCGAGAAGGGCGTCGGCAAGAGCGGCAAGCCGCTGCACTACAAGGGCAGCTCGTT
CCACCGCGTCATCCCCGACTTCATGTGCCAGGGCGGCGACTTCACCAGGGGCAACGGCAC
CGGCGGCGAGTCCATCTACGGCGAGAAGTTCGCCGACGAGAAGTTCGTCCACAAGCACAC
CAAGCCAGGGATCCTCTCCATGGCCAACGCCGGGCCCAACACCAACGGCTCCCAGTTCTT
CATCTGCACCGTCCCCTGCAATTGGCTCGACGGCAAGCACGTGGTCTTCGGCGAGGTCGT
CGAGGGCATGGACGTCGTCAAGAACATCGAGAAGGTGGGCTCCCGCAGCGGCATCTGCTC
CAAGCAGGTCGTCATCGCCGACTGCGGCCAGCTCTAGGTCCGTCCGCCCGTCGCGCTCGC
CCGTCGTCGTCGTCGTCGTGCCATGTGTCCCCTGTCGTGTCGTCGGTCTAAATAAGAAGT
CGTGTCGTGTCTTGCCCCTGTCCGTCCGATGAGATCTCCGTGGTTGGTTTAGGAGGGTTT
TAGGTGGACTCTTTAGGCTGCTGGATCTGCGTCCGGCCGCCATGGTTATCTTCCCTTGTC
TGTTACCGTTTGAATGAATGAGATGAACTCCGCTATGAATTATCCGTAAAAAAAAAAAAA
AAAATTCTGCAAAAAAAAAAAAAAAAATGGTTTGTCTTCCAAATGTACGAGCCGCTTTTC
GTAGTGTTATCCACTCGATTCCCGTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14255 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g02890.1	173	4e-93	protein\|peptidyl-prolyl cis-trans isomerase, putative, expressed
Brachypodium v1_2	Bradi3g01990.1	173	1e-94
Arabidopsis v10	AT2G21130.1	174	2e-86	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein \| chr2:9055619-9056143 REVERSE LENGTH=174