barSeed - Barley Seed Development Database

Probe CUST_1083_PI390587928

Source Contig U35_40118

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1083_PI390587928	Hv_44K_v2	TTTCAGACTTTGGATTAGCAAGGGAAGGGCCATCAGCAGATCAAACTCATGTGTCTACAG	456	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366590	1844	2e-24	989 - 1048	100	60 / 60	plus	ABC24439
MLOC	MLOC_53437.1	1335	2e-24	810 - 869	100	60 / 60	minus	ABC24439
MLOC	MLOC_53436.1	3046	2e-24	1903 - 1962	100	60 / 60	minus	ABC24439
MLOC	MLOC_53436.4	2516	2e-24	2115 - 2174	100	60 / 60	minus	ABC24439
JLOC1	JLOC1_34334.1	1623	8e-25	488 - 547	100	60 / 60	plus
Harvest21	ABC36419	544	3e-25	457 - 516	100	60 / 60	plus
Harvest35	U35_40118	544	3e-25	457 - 516	100	60 / 60	plus

Contig Sequence (544 bp)

>U35_40118 544 Hv_44K_v2
GCGACTTCAGCCGGCTGCTCAAGATCGGCGAGGGCGGGTTCGGGAGCGTCTACAAGGGGG
TCGTCCGCCTGCCCAGTGGCCCCGCCGGCGGCACCGTGGTGGCCATTAAAAGGCTCAACA
CCAGCGGCCACCAGGGTCATAAGCAATGGCTGGCAGAAGTTCATTTTCTAGGGGTTGTCG
AGCACCCGAACCTCGTCAAGCTCATCGGTTACTGTGCTGCCCGTAACGAACGAGGTCCTC
AGAGGCTGCTTGTCTATGAGTTCATCACCAACAAAACCCTGGATGATCATCTATTCAATC
GAGCATACCCTGTTCTTCCATGGGGAGTCAGGTTGGAAATAGTATTTGGTGCTGCTCAGG
GTTTGATGTATCTCCATGAAGGCCTGGAGGTTCAGATCATATATCGTGATTTCAAAGCTT
CCAACGTTCTGCTGGATGAGGAGTTTANACCGAAACTTTCAGACTTTGGATTAGCAAGGG
AAGGGCCATCAGCAGATCAAACTCATGTGTCTACAGCGGTTATGGNGACTTACGGTTATG
CGGC

Homology of Contig U35_40118 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43430.1	466	7e-109	protein\|protein kinase domain containing protein, expressed
Brachypodium v1_2	Bradi3g50280.1	439	1e-94
Arabidopsis v10	AT5G47070.1	410	8e-73	Protein kinase superfamily protein \| chr5:19118683-19120528 REVERSE LENGTH=410