barSeed - Barley Seed Development Database

Probe CUST_10833_PI390587928

Source Contig U35_26232

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10833_PI390587928	Hv_44K_v2	TTGATTCTTTGTGCCTCGACAGTCCAGGATGGGAAAATAGATCCAAACACCCATTTGATG	715	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362285	3902	2e-24	1655 - 1714	100	60 / 60	plus	ABC07960 ABC24913
MLOC	MLOC_4921.1	3584	2e-24	1084 - 1143	100	60 / 60	plus	ABC07960 ABC24913
MLOC	MLOC_4921.2	3362	2e-24	1082 - 1141	100	60 / 60	plus	ABC07960 ABC24913
JLOC1	JLOC1_3127.1	3404	8e-25	1082 - 1141	100	60 / 60	plus
Harvest21	ABC23631	774	1e-24	716 - 774	100	59 / 59	plus
Harvest35	U35_26232	775	3e-25	716 - 775	100	60 / 60	plus

Contig Sequence (775 bp)

>U35_26232 775 Hv_44K_v2
GAACATTTGTCATCAAAAGGACCCAAATTGCCATCCTTTTACTTTGGTAAAAGCCGGCCT
CCATTGGCTCCATTGATGCCTATTGCGGATCCAGATATATTTGGTAATTTCTGTAAAACA
AGGGAGGACCAGTCTAACTCTGAAGAAAGTATAGAGTCTGCCCGGTCTCAACTATCAAAG
GAGGATCTAAAAAATGCAACACATGATGCTAATGACATATCTGAGTCATTTGATAATTTT
CCATATTATCTAAGCGAGGATACCAAATGTGCTCTCCTGTCATCAACATTTGTGCATTTA
CAATGCAAAGACTATATTGAGTTTACCAAACACATTTCTTCTCTCGGTCAACGAGCATTG
CTGTCCGGTCCGGCAGGGACTGAGATCTACCAACAATATCTGGTGAAGGCACTTGCAAAA
CATTTCAGTGTGAGGTTGCTCACAGTCGATTCTTCAATGCTGTTTGGTGGGAAGACTTCC
AAGGAATTAGAGTCATACAAAAAAGGTGATAGAGTGAGGTACATTGGTTCATTACTGCCT
ACAAACGTTATCCTCGACGGACATAGTCCTCCAGAATTTGGCTCGCTAGGTCAAATATGT
CTTCCTTTCGAAGAAAATAGATCATCAAAGGTTGGGGTAAGGTTTGATGAACAAATCCCA
GGAGGTATTGATCTTGGAGGCAGTTGTGAAGTTGATCATGGCTTATTTTGTTCAGTTGAT
TCTTTGTGCCTCGACAGTCCAGGATGGGAAAATAGATCCAAACACCCATTTGATG

Homology of Contig U35_26232 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g22420.2	915	4e-131	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi1g18160.1	1099	3e-93
Arabidopsis v10	None