barSeed - Barley Seed Development Database

Probe CUST_10826_PI390587928

Source Contig U35_26237

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10826_PI390587928	Hv_44K_v2	ATGGTCGATATGAGTGTTGCTGATGTTAGTGTTGTCGTATAATCAGTTGATTTTTTGTCA	410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356989	1686	2e-24	1586 - 1645	100	60 / 60	plus	ABC31800
MLOC	AK363869	2514	2e-24	1521 - 1580	100	60 / 60	plus	ABC31800
MLOC	AK377041	3059	2e-24	95 - 154	100	60 / 60	minus	ABC03992 ABC31800
MLOC	MLOC_64360.3	634	2e-24	126 - 185	100	60 / 60	minus	ABC31800
MLOC	MLOC_64360.4	1181	2e-24	109 - 168	100	60 / 60	minus	ABC31800
JLOC1	JLOC1_42257.4	1898	8e-25	872 - 931	100	60 / 60	plus
JLOC1	JLOC1_42257.3	1754	8e-25	728 - 787	100	60 / 60	plus
Harvest21	ABC31800	562	3e-25	411 - 470	100	60 / 60	plus	ABC31800
Harvest35	U35_26237	562	3e-25	411 - 470	100	60 / 60	plus

Contig Sequence (562 bp)

>U35_26237 562 Hv_44K_v2
GCACACTGTAGCTACCTTTTTAAGGTATGTGGCCTATGAATATGCCAACTTAGATATGTT
GAAAAAGAAGATCGATGTCTAGAATTTTGGCGTGCTGCCATTGGAATCAGTGGCTCGGAG
GGATCCTATATATTGTTGTAAGCCAAGAAATGAGATGCATCCGGTGGCGTGGCTCAAGAT
GATGATGGGCACGAGGAGAGTTATGAGTGCCGAAGGAGTGTTTGGAAGTGTTTTGTTGTG
CAAAACATATGTTATATCAGAAGGTTTGAACTTTGAACAGCAAGAGCAGCACAATGGGAA
TCGTCATCGTGGTGGACAAAACTGATGTTCCTCATCCCCCTTTCCCTATAAGTTTGAGTC
ACTCTCATGCATCTTCATGGTAACTATCATAGTTGACTAGTTGCATGTGGATGGTCGATA
TGAGTGTTGCTGATGTTAGTGTTGTCGTATAATCAGTTGATTTTTTGTCATGTTATTATA
TCTGTGAAATTTGAACTTATATTGTTACTCATGTTAGATTTTGATTTAGGAAGTAATTAT
TCTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_26237 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None