barSeed - Barley Seed Development Database

Probe CUST_10818_PI390587928

Source Contig U35_38217

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10818_PI390587928	Hv_44K_v2	GCACTATTGGCTCTTTTGGTGTCCAATAATTTTGCCGAGATTAAAAGCAATGTATTTAAG	519	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358428	3219	2e-24	1633 - 1692	100	60 / 60	plus	None
MLOC	MLOC_13289.1	1317	2e-24	300 - 359	100	60 / 60	plus	None
MLOC	MLOC_13289.2	1332	2e-24	300 - 359	100	60 / 60	plus	None
JLOC1	JLOC1_8978.3	2244	8e-25	265 - 324	100	60 / 60	plus
JLOC1	JLOC1_8978.2	1730	8e-25	289 - 348	100	60 / 60	plus
JLOC1	JLOC1_8978.1	1636	8e-25	304 - 363	100	60 / 60	plus
Harvest21	ABC34087	677	3e-25	520 - 579	100	60 / 60	plus
Harvest35	U35_38217	677	3e-25	520 - 579	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_38217 677 Hv_44K_v2
TTGGCGAGGATGTGTTGCAAGTTTTGTTCAACTCAGCTGAGGGACTGTCAACGTGTTCAA
CTGACAGGGTTACATTTGAACTGTTGCGGTTCCTTTTAGATGGGGCTATTGCTGTCCTCG
CATTTGATATCCTTGGCTCCAAACTATGATGTCTTACTTTTACATGCCTTTGTTTAATTT
ATTAAATTCTACAAGTTTGTGGTGTCAGAATCCCCCAATTCAAAGGAAAACTATGTAGCC
CACACTAATATGTAGCACCGAGCTGATTATAAGCTCACAGTAAAGATATGGTAGTCATCG
TGTAATGTTAGTTTTAGTTGGAATCACAGTGACTTGAGTTTTATCTAACATAAGTTCGTC
CAGCTTTCAGTTAGACTGTAAGTTTACTTTGTTACCTTTGCTGCTTCCATTTCATATTAA
TCTGGATTTGGTTTCCTTAACAAGTCATTACTTGTGCATTCATTTGTCCTCTTAGCCCAA
GCTATCACCTTATCAACATGTATTATTGCCCATAACAATGCACTATTGGCTCTTTTGGTG
TCCAATAATTTTGCCGAGATTAAAAGCAATGTATTTAAGAAAGTTAGCAAAGAGAACCTT
CACAATCTGGTTTACTATGGTNGAGTGTCCTTATGATTGTGTCATTTCCATGATTCTAAA
TCAGATGCTGCTGGATG

Homology of Contig U35_38217 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None