barSeed - Barley Seed Development Database

Probe CUST_10810_PI390587928

Source Contig U35_14267

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10810_PI390587928	Hv_44K_v2	AACAGCCCTCCAACAGTTAGATTCACTTCTGAAATGTGGCATCCTAATGTTTATCCGGAT	426	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57406.1	1079	2e-24	481 - 540	100	60 / 60	plus	ABC01562 ABC01563 ABC03462 ABC35263
JLOC1	JLOC1_37197.1	1197	8e-25	492 - 551	100	60 / 60	plus
Harvest21	ABC36853	589	3e-25	495 - 554	100	60 / 60	minus
Harvest21	ABC01562	1247	3e-25	646 - 705	100	60 / 60	plus	ABC01562
Harvest35	U35_14267	1039	3e-25	427 - 486	100	60 / 60	plus

Contig Sequence (1039 bp)

>U35_14267 1039 Hv_44K_v2
CAAATATGTTGAACATCACCTCAAGTCCCCACCCTCTGTCCCATATGACAAGCCGCTTTC
TCCTTCCCGTCTCTCTCCTCTCCTCTGGTCCCGATTCCCTTCTCCGAGCTCCTCCCTATA
AATAAGGCGGCCCGCGGCGGCCATCAATCCCCGTCACCGCCTACCGAGAGGCCGCGAATT
ATTCCTCCGCCCGCCGCGAAAACCCTAGCCGCCGCCGATCCCATGGCCACCGCCTCCAGC
CAGGCGAGCCTCCTCCTCCAGAAGCAGCTCCGAGATCTCGCGAAGCACCCCGTCGATGGG
TTTTCAGCTGGGCTCGTCGACGACAGCAACGTCTTCGAGTGGCAGGTCACCATCATCGGC
CCGCCGGAGACCCTATATGATGGAGGCTATTTCAATGCTATTATGAGCTTCCCACAAAAT
TATCCGAACAGCCCTCCAACAGTTAGATTCACTTCTGAAATGTGGCATCCTAATGTTTAT
CCGGATGGGCGGGTATGCATTTCTATTCTTCATCCACCTGGTGATGATCCCAACGGATAC
GAGCTCGCGAGTGAGCGTTGGACACCAGTCCATACGGTTGAGAGTATAGTATTAAGCATC
ATTTCGATGCTTTCTAGTCCGAATGATGAATCACCGGCAAATATTGAAGCAGCAAAGGAC
TGGAGAGAGAAGCAGGATGAGTTCAAGAAGAAGGTTAGGCGTGCCGTAAGGAAATCCCAG
GAAATGCTCTGAATAAAATGGGAGTACCGGGGAAGTTAGCCATGCCATTTCAGGTGTGGA
GGGTTTTGCTGTCGATCTCCAAATGTCCATCCGACACTAGCAATTTCACTTCTCCCCTGT
ATATTTTCCATTGGCCTGTCTCCTGTGGAGGTCTTGGTTTTGGCTCTGAAAACGCAACCC
TTATTCTAAGGGCCTGGTTGTTGTAATTGTGTGGCTTCGGCTATCAAATATTGAGAAACT
TTGGAGAGCTGCTACTTACCATAATTTTTTTAACGAATCTGATATAAAAGGACACCTGCC
TGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14267 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62244.1	170	1e-97	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi2g54550.1	170	4e-100
Arabidopsis v10	AT3G46460.1	166	5e-90	\| Symbols: UBC13 \| ubiquitin-conjugating enzyme 13 \| chr3:17096120-17097315 REVERSE LENGTH=166