- Probe CUST_10802_PI390587928
- Source Contig U35_26241
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10802_PI390587928 | Hv_44K_v2 | CGGTGTAATGTAATTCCAGACATGGATATTTGTATCTAAGCGTTTCCATTCTGAGAAAAA | 499 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.025 | 4.920 | 1.234 | 0.813 | 0.246 | 0.440 |
| Raw | 2222.803 | 2987.129 | 627.992 | 717.327 | 67.705 | 137.466 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369292 | 606 | 3e-22 | 537 - 592 | 100 | 56 / 56 | plus | ABC03517 |
| MLOC | MLOC_4567.1 | 302 | 3e-22 | 184 - 239 | 100 | 56 / 56 | plus | ABC03517 |
| MLOC | MLOC_4568.3 | 2590 | 3e-22 | 184 - 239 | 100 | 56 / 56 | plus | ABC03517 ABC16561 |
| MLOC | MLOC_4568.1 | 1520 | 3e-22 | 184 - 239 | 100 | 56 / 56 | plus | ABC03517 ABC16561 |
| MLOC | MLOC_4568.4 | 2649 | 3e-22 | 184 - 239 | 100 | 56 / 56 | plus | ABC03517 ABC16561 |
| MLOC | MLOC_4568.2 | 2119 | 3e-22 | 184 - 239 | 100 | 56 / 56 | plus | ABC03517 ABC16561 |
| MLOC | MLOC_4568.6 | 2773 | 3e-22 | 184 - 239 | 100 | 56 / 56 | plus | ABC03517 ABC16561 |
| MLOC | MLOC_4568.7 | 2668 | 3e-22 | 184 - 239 | 100 | 56 / 56 | plus | ABC03517 ABC16561 |
| MLOC | MLOC_4568.5 | 3065 | 3e-22 | 184 - 239 | 100 | 56 / 56 | plus | ABC03517 ABC16561 |
| MLOC | MLOC_4568.8 | 2708 | 3e-22 | 184 - 239 | 100 | 56 / 56 | plus | ABC03517 ABC16561 |
| JLOC1 | JLOC1_2861.8 | 2663 | 1e-22 | 2425 - 2480 | 100 | 56 / 56 | minus | |
| JLOC1 | JLOC1_2861.7 | 2681 | 1e-22 | 2443 - 2498 | 100 | 56 / 56 | minus | |
| JLOC1 | JLOC1_2861.6 | 2688 | 1e-22 | 2450 - 2505 | 100 | 56 / 56 | minus | |
| JLOC1 | JLOC1_2861.5 | 2674 | 1e-22 | 2436 - 2491 | 100 | 56 / 56 | minus | |
| JLOC1 | JLOC1_2861.4 | 2650 | 1e-22 | 2412 - 2467 | 100 | 56 / 56 | minus | |
| JLOC1 | JLOC1_2861.3 | 2603 | 1e-22 | 2365 - 2420 | 100 | 56 / 56 | minus | |
| JLOC1 | JLOC1_2861.2 | 2610 | 1e-22 | 2372 - 2427 | 100 | 56 / 56 | minus | |
| JLOC1 | JLOC1_2861.1 | 2455 | 1e-22 | 2217 - 2272 | 100 | 56 / 56 | minus | |
| Harvest21 | ABC03517 | 723 | 1e-23 | 556 - 616 | 98 | 60 / 61 | plus | ABC03517 |
| Harvest35 | U35_26241 | 562 | 3e-25 | 500 - 559 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1054 | 742 | 1e-23 | 556 - 615 | 98 | 59 / 60 | plus |
Contig Sequence (562 bp)
>U35_26241 562 Hv_44K_v2 GCACGAGGATCGGATTGCCTTCGGATTCGTCGATCCATCGAGAATGTCGAGCCTCGAGGA ACCACTTGGCCTTGGGGACCTGCCAAAGTTGAGTATTAATAGACTTGGAAGGTTCTGCCA AAGTGCTTGCAGATCAGGAGCTGATGACCGCAGCACCGGCAATTACACGCCCAGCAACAG TGGCAACAACCAGACGCTCTTTCACAGCACTTCTCACTCATGGCATCTGCAAGGCCAGTA TACCGATTCATCCTGCAATGGAGTGGATATGGAGTTCAGAGCTCTTCCGCGAAAGGTATC CTGGGATCTCCCAAGGTTTGTGAAGGTGGTCGAGGTTGGACCACGAGATGGGCTGCAGAA CGAGAAGAACATTGTACCGACATCAGTAAAGATTGAGCTGATACACAAGTTGGTGGCTTC TGGTCTGTCAGTAGTTGAAGCCACAAGTTTTGTTTCCCCCCGTCGCCTCATGTAATCCGC TCACGAGCATCGCCATGATCGGTGTAATGTAATTCCAGACATGGATATTTGTATCTAAGC GTTTCCATTCTGAGAAAAAAAA
Homology of Contig U35_26241 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g04020.1 | 388 | 5e-80 | protein|hydroxymethylglutaryl-CoA lyase, putative, expressed |
| Brachypodium v1_2 | Bradi4g43510.2 | 325 | 7e-88 | |
| Arabidopsis v10 | None |