barSeed - Barley Seed Development Database

Probe CUST_10798_PI390587928

Source Contig U35_26244

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10798_PI390587928	Hv_44K_v2	AAGGGCTTCATGTGAAACAGTTCCAGAGGTAAATGACATCAAAGGGGTCACGGTTGGATA	464	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52795.4	1514	2e-24	1051 - 1110	100	60 / 60	plus	ABC06775
MLOC	MLOC_52795.5	2612	2e-24	915 - 974	100	60 / 60	plus	ABC06775
MLOC	MLOC_52795.2	3453	2e-24	1638 - 1697	100	60 / 60	plus	ABC06775
JLOC1	JLOC1_33845.3	2784	8e-25	1008 - 1067	100	60 / 60	plus
JLOC1	JLOC1_33845.2	3373	8e-25	1597 - 1656	100	60 / 60	plus
JLOC1	JLOC1_33845.1	3467	8e-25	1691 - 1750	100	60 / 60	plus
Harvest21	ABC21773	609	3e-25	465 - 524	100	60 / 60	plus
Harvest35	U35_26244	609	3e-25	465 - 524	100	60 / 60	plus

Contig Sequence (609 bp)

>U35_26244 609 Hv_44K_v2
AGAACGCACAACCTCAGGCACTGGTTTCAGCTGGCCCTGGTGCTCCTGGTGAGCGCCTGC
CCGTGCGCTCTAGTTCTGTCGACGCCGGTCGCCACCTTCTGCGCGCTGCTCATGGCCGCG
AGGACCGGGCTGCTCATCAAAGGAGGGGATGTCCTCGAGTCCTTGGCCGGGATCAAAGTC
GCGGCTTTCGACAAAACCGGCACGATCACCAGCGGAGAGTTCTCCGTAGCCGAGTTCCGG
CCAGTCGGAGAACGTGTTCCGAGGCAGCAGCTTCTCAGCTGGGTTTCGAGCGTCGAGAGC
AGGTCGAGCCACCCAATGGCAGCTGCCCTTGTTGATTATGCTCGATCGAACTCCGCGAAA
CCGACACCGGAGAATGTCATGGAATTTCAGATTTATCCTGGCGAGGGGATTTATGGTGAA
ATCGACGGACATGGCGTATATGTCGGGAACAGAAGGATCTTGTCAAGGGCTTCATGTGAA
ACAGTTCCAGAGGTAAATGACATCAAAGGGGTCACGGTTGGATACGTGGCCTGCAACAAG
GAACTGGTGGGGATATTCGGTCTCTCGGACGTCTGCCGAACTGGATCCGCCGAAGCCATC
AGGGAGCTC

Homology of Contig U35_26244 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g12900.1	1005	7e-74	protein\|cadmium/zinc-transporting ATPase, putative, expressed
Brachypodium v1_2	Bradi1g34140.1	1040	8e-103
Arabidopsis v10	AT4G30110.1	951	2e-73	\| Symbols: HMA2, ATHMA2 \| heavy metal atpase 2 \| chr4:14720253-14724577 REVERSE LENGTH=951