barSeed - Barley Seed Development Database

Probe CUST_10786_PI390587928

Source Contig U35_14270

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10786_PI390587928	Hv_44K_v2	CTATTGTTTTTATTCACTTGACCTGGTTAAATCAGAAGCGAGCTTTTTGGTTCCAAGAAA	1977	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2075.1	2048	3e-21	1995 - 2048	100	54 / 54	plus	ABC01560 ABC01562
JLOC1	JLOC1_1251.1	2372	2e-21	2103 - 2156	100	54 / 54	plus
Harvest35	U35_14270	2051	3e-25	1978 - 2037	100	60 / 60	plus

Contig Sequence (2051 bp)

>U35_14270 2051 Hv_44K_v2
GGTGGAAGTTTCTTCCGGTCCCAGAGAGATCGCGGAGGGGAGGAGGATGACGGGAGGGCG
CGCGGTGCTCCTGCTGCCGCTGCTGGTGATCTCGGCGCTGTTCGCGCAGATCAGCGCGTC
GGATCCGCTGTTCCACGAGTCCTTCGACGAGAGCTTCGACGGGAGCTGGATCGTGTCCGG
CAAGGATGAGTACAAAGGTGCATGGAAGCACTCGAAGAGTGATGGCCATGAAGACTATGG
CCTCCTTGTTAGTGAGCCAGCCAGGAAATATGCCATAATCAAAGAGCTTGATTACCCTGT
TACTTTGAAGGACAAGACAGTTGTCCTGCAGTTTGAAGTGAGGCTTCAGAATGGCCTTGA
GTGTGGAGGTGCTTATATCAAGTACATCCGTCCTCAGGCTGTGGGATGGAACGCCAAGGA
CTTTGACAATGATACTCCATACACAATTATGTTTGGTCCTGACAAGTGCGGTTCAACAAA
CAAGGTTCACTTCATCCTGAAGCACAAGAACCCTAAGACTGGCAAATATGTTGAACATCA
CCTCAAGTCCCCGCCCTCTGTCCCATATGACAAGCTCTCTCATGTCTACACGGCTATCTT
GAAGCCGGATAACGAGGTCAGAATTTTGGTTGATGGGGTGGAGAAGAGCAAAGCAAACTT
CCTGTCTGCTGATGATTTTGAGCCAGCACTTATTCCATCAAAGACTATTCCTGATCCCGA
CGACAAGAAGCCAGAGGACTGGGATGAGAGAGCTAAAATCCCTGATCCAGATGCCGTGAA
GCCTGATGACTGGGATGAGGATGCCCCAATGGAAATTGTGGATGAGGAGGCCACCAAGCC
TGAAGGATGGTTGGATGATGAGCCTGAGGAAATTGATGATCCAGAGGCTGCTAAGCCTGA
GGACTGGGATGATGAGGAGGATGGCGAATGGGAGGCACCGAAGATGGACAACCCCAAGTG
CGAAGAGGCACCTGGATGTGGTGAATGGAAGAAGCCAATGAAGGATAACCCTGCCTACAA
GGGCAAGTGGCATGCACCCCTGATTGACAACCCCAACTACAAGGGAATCTGGAAGCCCCA
AGAAATCCCCAACCCTGAGTACTTTGAGCTTGACAAGCCTGACTTTGACCCAATTGCTGC
TATTGGAATTGAGATCTGGACAATGCAGGATGGCATCCTGTTTGACAACATTCTTATTGC
CGATAATGAGAAGGTAGCCACCTCTGTCCTGGAGAAGACATGGAAGCCCAAGTTTGATGT
TGAGAAGGAAAAGCAGAAGGCTGAGGAGGCTGCAGCAGGTGCATCAGAGGGCCTTTCTGA
GTTCCAGAAGAAGATCTTCGACATTTTGTACAAGGTCGCAGACATCCCGTTCTTGGAACC
ATACAAGACCAAGATCATTGAAGTGATTGAGAAGGGAGAGACGCAGCCGAACATTACAAT
TTCGATTCTGGCCTCCGTCGTTGTCGTCATTGTGACTGTACTCTTCAGAACCTTGTTTGG
TGGCAAGAAGCCAGTGGCACCTGTGAAGCCCGCTGCTGAGACCAAGAAGCCCAGTGCTGT
TGTTCCTGATGCCACCGCTGGAAGCAGCGGCGACAAGGAGGAGAAAGAGGACGACAAGGA
TGCGCCACGCCGAAGGTCGCGAAGAGACGCATAAACTAACTCTTGGTGCCTTCGCATTTT
GAAGGACTCGGCTCTAGCCTTTTTGAGAACGCCTCGAGTGTATAATCGAACCCTCTGCTG
CTAGTAGCAACCTCTAGTTTTTAAGTCGCTAGAAATTTACGAGCCGGCGAAGCTCGTGTT
GATCGGTTGTTTGTGTGCTGTTCTGAATCAGCTAGAAGAGACTGTTTTATTTTTCCTTTT
CTTTTGTTTTATATCAGATGAAACATGAAGCTTGTGTTTGGTTGTTTGTGTGCTGTGCTA
AATCAGGTAGTCCCTCCGATCCAAAAAAAAAAAAAAAAATTCCGTAGAAACCATTTACTA
TTGTTTTTATTCACTTGACCTGGTTAAATCAGAAGCGAGCTTTTTGGTTCCAAGAAAAAA
AAAAAAAAAAA

Homology of Contig U35_14270 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g32950.1	538	protein\|calreticulin precursor protein, putative, expressed
Brachypodium v1_2	Bradi2g01440.1	536
Arabidopsis v10	AT5G61790.1	530	\| Symbols: CNX1, ATCNX1 \| calnexin 1 \| chr5:24827394-24829642 REVERSE LENGTH=530