barSeed - Barley Seed Development Database

Probe CUST_10785_PI390587928

Source Contig U35_5626

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10785_PI390587928	Hv_44K_v2	CCTTCCTCAGGAGCATGAGCAGGATGAACTCCGTCTCCGTCTAGTATCAGCAGTAACCCC	671	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356027	1240	2e-24	896 - 955	100	60 / 60	plus	ABC14229 ABC19214
MLOC	MLOC_81267.1	1088	2e-24	370 - 429	100	60 / 60	minus	ABC14229
MLOC	MLOC_81267.2	615	2e-24	152 - 211	100	60 / 60	minus	ABC14229
JLOC1	JLOC1_54074.1	1344	8e-25	499 - 558	100	60 / 60	minus
Harvest21	ABC14229	1246	3e-25	875 - 934	100	60 / 60	plus	ABC14229
Harvest35	U35_5627	1066	3e-25	693 - 752	100	60 / 60	plus
Harvest35	U35_5626	731	3e-25	672 - 731	100	60 / 60	plus

Contig Sequence (731 bp)

>U35_5626 731 Hv_44K_v2
GTCGTCTCTACTCATCACTTCCTCTCTTCACTCTGGTTTACTCCTGTGTTTCCGCCGCAC
ATCTGGGCGCTCGAGGAGGAAATGGCAGGAGGAGGCGATAACTCCCAGACGAACGGAGGA
GCTCAAGAGCCGCGCGCCATGGAGGAAGGGAGGAAGGAGGACTATGACCAGGGCTGCGGC
CTCGCCATCTCTCTCCCCTTCGTCCAGAAGATCATCGCCGAGATTTTCGGGACGTACTTC
CTGATCTTCGCCGGGTGCGGCGCGGTGACCATCAACAAGAGCAAGGGGCAGATCACGTTC
CCCGGCGTAGCCATCGTGTGGGGCCTCGCCGTGATGGTGATGGTGTACTCCGTCGGCCAC
ATCTCCGGCGCGCACTTCAACCCGGCCGTCACCTTCGCGTTCGCCACCGTGCGCCGATTC
CCGTGGCGGCAGGTGCCGGCGTACGTGCTGGCGCAGATGCTGGGGGCCACGCTGGCCAGC
GGCACGCTGAGGCTCATGTTCGGCGGGCGCCACGAGCACTTCCCCGGCACGCTCCCTACC
GGGTCCGACGTACAGTCACTCGTTCTCGAGTTCATCATCACCTTCTACCTCATGTTCGTC
ATTTCGGGCGTGGGCGTACAACCTCATCCGCTTCACCAACAAGCCGCTGCGCGAGATCAC
CAAGAGCACCTCCTTCCTCAGGAGCATGAGCAGGATGAACTCCGTCTCCGTCTAGTATCA
GCAGTAACCCC

Homology of Contig U35_5626 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13870.1	285	2e-102	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi3g08930.1	281	6e-111
Arabidopsis v10	AT4G18910.1	294	6e-65	\| Symbols: NIP1;2, NLM2, ATNLM2 \| NOD26-like intrinsic protein 1;2 \| chr4:10366211-10368179 FORWARD LENGTH=294