barSeed - Barley Seed Development Database

Probe CUST_10784_PI390587928

Source Contig U35_5627

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10784_PI390587928	Hv_44K_v2	TGATGGAGACAGACAGGTGTGCATACGGGATTAATGGTAGCCTAATTAATTCCGAAAAAA	994	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.109	4.471	1.528	0.784	0.431	0.477
Raw	97.239	110.468	32.561	28.982	2.825	5.248

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81267.1	1088	3e-21	74 - 127	100	54 / 54	minus	ABC14229
JLOC1	JLOC1_54074.1	1344	2e-21	203 - 256	100	54 / 54	minus
Harvest21	ABC14229	1246	6e-22	1177 - 1236	97	58 / 60	plus	ABC14229
Harvest35	U35_5627	1066	3e-25	995 - 1054	100	60 / 60	plus

Contig Sequence (1066 bp)

>U35_5627 1066 Hv_44K_v2
GGCCATCTCTCTCCCCTTCGTCCAGAAGATCATCGCCGAGATTTTCGGGACGTACTTCCT
GATCTTCGCCGGGTGCGGCGCGGTGACCATCAACAAGAGCAAGGGGCAGATCACGTTCCC
CGGCGTAGCCATCGTGTGGGGCCTCGCCGTGATGGTGATGGTGTACTCCGTCGGCCACAT
CTCCGGCGCGCACTTCAACCCGGCCGTCACCTTCGCGTTCGCCACCGTGCGCCGATTCCC
GTGGCGGCAGGTGCCGGCGTACGTGCTGGCGCAGATGCTGGGGGCCACGCTGGCCAGCGG
CACGCTGAGGCTCATGTTCGGCGGGCGCCACGAGCACTTCCCCGGCACGCTCCCTACCGG
GTCCGACGTACAGTCACTCGTTCTCGAGTTCATCATCACCTTCTACCTCATGTTCGTCAT
TTCGGGCGTGGCCACCGACAACAGAGCCATCGGGGAGTTGGCAGGGCTGGCCGTGGGTGC
AACCATCCTTCTTAATGTGTTGATCGCTGGGCCGGTGTCGGGGGCGTCGATGAACCCGGC
GAGGACGGTGGGGCCGGCGCTGGTGGGGAGCGAGTACAGGTCGATCTGGGTGTACGTGGT
GGGCCCGGTGGCCGGAGCCGTGGCCGGGGCGTGGGCGTACAACCTCATCCGCTTCACCAA
CAAGCCGCTGCGCGAGATCACCAAGAGCACCTCCTTCCTCAGGAGCATGAGCAGGATGAA
CTCCGTCTCCGTCTAGTATCAGCAGTAACCCCGCGACGTACGTACGTACGGTGTATTACT
ACAACTGCTACTACAAGAGTCTATGTACGTATGTAATCGTCATCGTGGCCATATGTCCGT
GGCGTATCGAGTGGGCTGCTGCACTCTACTCCTCTAGTGGTCTTGGCCTAACTGAACCTG
CGAGAGTATGTATATGTGGAAAAAGTTGTGTTTTGGAACCATGTCATGTGTGGTGGAATT
CGCCTGGCGCCAGCGTTTGTCAAGGGTGGGCCTTTGATGGAGACAGACAGGTGTGCATAC
GGGATTAATGGTAGCCTAATTAATTCCGAAAAAAAAAAAAAAAAGG

Homology of Contig U35_5627 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13870.1	285	2e-132	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi3g08930.1	281	9e-138
Arabidopsis v10	AT4G18910.1	294	6e-103	\| Symbols: NIP1;2, NLM2, ATNLM2 \| NOD26-like intrinsic protein 1;2 \| chr4:10366211-10368179 FORWARD LENGTH=294