barSeed - Barley Seed Development Database

Probe CUST_10780_PI390587928

Source Contig U35_5631

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10780_PI390587928	Hv_44K_v2	ATTGCTTCAAAGATGTCTCGGAGTGTTGTTGCACTCGCTTCATACAGTGGCGATTGTAAC	810	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63482.3	2350	2e-24	898 - 957	100	60 / 60	minus	ABC13595
MLOC	MLOC_63482.4	2446	2e-24	846 - 905	100	60 / 60	minus	ABC13595
MLOC	MLOC_63482.1	2499	2e-24	905 - 964	100	60 / 60	minus	ABC13595
MLOC	MLOC_63482.2	2350	2e-24	862 - 921	100	60 / 60	minus	ABC13595
JLOC1	JLOC1_41583.8	2454	8e-25	1417 - 1476	100	60 / 60	plus
JLOC1	JLOC1_41583.7	2381	8e-25	1344 - 1403	100	60 / 60	plus
JLOC1	JLOC1_41583.6	2430	8e-25	1436 - 1495	100	60 / 60	plus
JLOC1	JLOC1_41583.5	2473	8e-25	1436 - 1495	100	60 / 60	plus
JLOC1	JLOC1_41583.4	2339	8e-25	1345 - 1404	100	60 / 60	plus
JLOC1	JLOC1_41583.3	2266	8e-25	1272 - 1331	100	60 / 60	plus
JLOC1	JLOC1_41583.2	2152	8e-25	1115 - 1174	100	60 / 60	plus
JLOC1	JLOC1_41583.1	2090	8e-25	1096 - 1155	100	60 / 60	plus
Harvest21	ABC13594	933	3e-25	811 - 870	100	60 / 60	plus
Harvest35	U35_5631	934	3e-25	811 - 870	100	60 / 60	plus

Contig Sequence (934 bp)

>U35_5631 934 Hv_44K_v2
TTGCTGTGGTCATTACATATTCCCCTGATCTTAGTACAGTATGTTTCAGTAACAGCGTGC
AAGTCCAGCAGCATACTGGTTTGTTAGCTCTAGTGCGTTGCTTCGAGTCAGGCAAGTTAA
TGCAAGCACATGGGGTACCGAGTGATGACCCAAGTAAAATTGACAGCAAAGGGTCTATGT
TTTCCACATGCAAAATTACTATGGTGCACTGTTGGTTTCTCTCCATATTTGTCGAATCAT
TATATTCACCGTCTTTGTATGCTTCGAAATTTACAATTTTTCTATGTACACACTTCATTT
TTGTGCTAGGAGGGAAGTGGTGGTCCACTTGTTGATCTTGATGGGAGTATTGTTGGGATG
AATGACTACCATAATCAGGAAGGAACTCCATATGTGCTAGGAAATAAGATTGATAAATGT
TTGAGGGATGCTTGGATATGTAGGGACGAAATGCAACGACATTGCTGGCAAAGTTTTCCC
AGTGCTTTTAGGCGCCAGTTTGAAGGTAGCTCCAATCAAAATGGTTATAGTGAGGGAAGT
GAAAGTGAGAACCAGAAACAGTTTTTATCTTCTAACCCTGAGCCACAAGCACTAGAATTT
ACTGAGAATGTACCTACACCAGAGCTCATTAACAATGGGCATAAGCATACTCTACATCCG
TGGCCATCTAATGGCCTCACAAAGATGATAAATGCTCAATTAAATTCTGATGGTTACCCC
TTACCAGACTATGAGGATGGAGTCATGCGTTTGGAAGGTAGTTTTGAAGAGAAATTTGGC
AGAGATTTCTTGAGTGAACCTGCTAGCAAAATTGCTTCAAAGATGTCTCGGAGTGTTGTT
GCACTCGCTTCATACAGTGGCGATTGTAACGTCGTGGGAAGGCATTTTGCTTGCACAGGG
GTATGTATAGACTTCAATGGATCCACATCCATGA

Homology of Contig U35_5631 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None