- Probe CUST_10779_PI390587928
- Source Contig U35_5632
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10779_PI390587928 | Hv_44K_v2 | CTGTGGAGTTATTTGGATCTTTATGCTTGGAGCTGTGGAGTTATTTGGTCTCGTAAAAAA | 768 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.195 | 1.385 | 1.154 | 0.998 | 0.430 | 0.497 |
| Raw | 521.357 | 946.709 | 698.840 | 938.744 | 143.537 | 178.257 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63482.3 | 2350 | 3e-22 | 53 - 108 | 100 | 56 / 56 | minus | ABC13595 |
| MLOC | MLOC_63482.4 | 2446 | 3e-22 | 44 - 99 | 100 | 56 / 56 | minus | ABC13595 |
| MLOC | MLOC_63482.1 | 2499 | 3e-22 | 60 - 115 | 100 | 56 / 56 | minus | ABC13595 |
| MLOC | MLOC_63482.2 | 2350 | 3e-22 | 60 - 115 | 100 | 56 / 56 | minus | ABC13595 |
| JLOC1 | JLOC1_41583.8 | 2454 | 1e-22 | 2266 - 2321 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_41583.7 | 2381 | 1e-22 | 2193 - 2248 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_41583.6 | 2430 | 1e-22 | 2242 - 2297 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_41583.5 | 2473 | 1e-22 | 2285 - 2340 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_41583.4 | 2339 | 1e-22 | 2151 - 2206 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_41583.3 | 2266 | 1e-22 | 2078 - 2133 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_41583.2 | 2152 | 1e-22 | 1964 - 2019 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_41583.1 | 2090 | 1e-22 | 1902 - 1957 | 100 | 56 / 56 | plus | |
| Harvest21 | ABC13595 | 838 | 3e-25 | 769 - 828 | 100 | 60 / 60 | plus | ABC13595 |
| Harvest35 | U35_5632 | 838 | 3e-25 | 769 - 828 | 100 | 60 / 60 | plus |
Contig Sequence (838 bp)
>U35_5632 838 Hv_44K_v2 TGCACAGGTGTATGTATAGACTTCAATGGATCCACATCCATGACAAGAGTTCTGACTTCA GCAAGCTTGGTTAGAACTTCTGGTGATGAAAACAAGATTGTTGATAACTTGAAGATTGTA GTGTGTCTTCCAAGTAAGGGGTACATTACAGGGAAATTAGAAAAATATGATTTCTGCTAC AATGTTGCTGTTATCAGCATCCCGTTTCGCTGTAATCGTCCAGCAATGTTGGTTGATGCA CCACAAACTGAGGTATTAGCTCTCGGCCGTGTTTTCAAATCAGGCAATAGTATGGCTACA GAGGGGTCAGTGACTGGCAAAACATGCAAATTTGGTTGCGAAGAGCTTAAGATCTCCTCC TGTAAAATCACCAAGGCTGGAATTGGAGGGCCCCTTCTTGATTTTAAGGGGAATGTTGTT GGCATGAACTTCTATGACACGGAAGGAACTCCTTACCTGCCAAGTAAGATAATTCTGAAA GTATTAAGGAGTTTTGATGCAATGCGGCCTGCTGCTGCTGGTATTACAAAGAAGCTTAAT TCTAGTTGGCCGGTGCCGAAGCCACATTGGTATTACGCGAGTGAACATCGTCACGGTCGT AAGATCAAACCAAAAGTTAAAGTTATGTAAACCGCCGTGAAATGATATCACACTGACTGC TCAAGATGGTACCCAAAGAATGGTTTGCTCATATTTTATTCGAACAAACTTGTAAGTAAT GACAGGATAATGTGGTAACATTGTTAATAATGATCTTTATGCTTGGAGCTGTGGAGTTAT TTGGATCTTTATGCTTGGAGCTGTGGAGTTATTTGGTCTCGTAAAAAAAAAAAAAAAA
Homology of Contig U35_5632 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g47030.3 | 540 | 3e-55 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g53980.1 | 625 | 3e-68 | |
| Arabidopsis v10 | None |