barSeed - Barley Seed Development Database

Probe CUST_10772_PI390587928

Source Contig U35_5639

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10772_PI390587928	Hv_44K_v2	GTACGTACATTGTTGTAATGTGGTCGATTCAGATAGTTTTCTGAGGAATAAAGTTAACTC	1167	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.352	0.551	1.245	2.021	1.250	1.124
Raw	95.201	241.769	473.247	1150.822	262.680	253.727

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369558	1326	2e-24	1225 - 1284	100	60 / 60	plus	None
MLOC	MLOC_13393.1	686	2e-24	69 - 128	100	60 / 60	minus	None
JLOC1	JLOC1_9066.1	656	8e-25	43 - 102	100	60 / 60	minus
Harvest35	U35_5639	1254	3e-25	1168 - 1227	100	60 / 60	plus

Contig Sequence (1254 bp)

>U35_5639 1254 Hv_44K_v2
ACGCCCCCTCCCGCCCCCCAGCTCAGATCCATCGCCGGCCGAAGCACCCGACACGCATGC
CGGGCCTCCTCGCCTACTCGGGCGCCGGGCTGGGCCTCCTGGCCCTGGCGGCGCTGGAGG
CGCTCCAGCCGCGCCTCCCGCTCCTCCCGCGCCGCCTCTCCGCGCCGCCGCACGGCCGTC
ACATCCTCGCCGCGCTGCTGTCCGCGCTCTGCCTCCTCTCGGCGCTGCTCTCCGCGCACC
ACCTCGCGCTGCCCACGCTGGCCGCCTCCGCGCTCTTCCTGCTCCACTCCCTCGCCCCGT
TCGCGTTCGCGCGGCTCGCCGCCCCGCCCCCGCCCCAGCTGCTCGAACTCCTCCTCGCCG
CGGCCTTCGGGCAGGAGCTCCTTCTCTTCGCGCACCGACGCCCGTCCACCGCCGCCGGCA
TCGAGAACCGCTACTTCGACCTCTTCCTCGTCCCCGTCACCGTCTGCCTCGGCGCCACCC
TGCTCGCCGCGCACCGCCCGGGGGCCGCGCCGCCCCGCCTCGCCCGCGCCGCCGGCCTTG
CCCTGCAGGGCACCTGGATGCTGCAGATGGGCTTCTCCTTCTTCACGGACGCCATCGCCG
GCGGCTGCGCGCTCCACGCGCAGAGCCGGGCCGACTACACCATCAAGTGCCGCACACACG
AGGACTACCACCGCGCGCGCTCCGTCGCCACACTGCAGTTCAACGGCCACCTGGCGCTGC
TCGTGCTCGCTGGGGCGGCGACGTACGCTGCTGTCATCTCGAGAGGGAACAACAGCCCAC
CCAGCGGGTACAGGATGCTGGACAAGGAGGTCCAGATGGAGGGCATGCCATTGTCATCTC
AGTTTACGCTGGACTCGGATGAGGAGAAGGAAGATGAAGAGATCACACCCGCCGCACCAC
CGGTGGCGAATGGGGTGCACTCCCATCACCAGATCTCCGTGCAGACACCTGATGATCCCA
AGTAATCTGGATGGAGTTGGGTGCTTTTGATGTAGAATAGCTCATTGGAGGTGAATATCA
CAGCGAAACTGAAGAATGATACGGCATCATGTTTGTGTGTTTCCCCTGCATTTCATTATG
GTACCCTCTTTTCGACACTTTGAGATCACCTTAGGTGTGGGTATGGAGCATGCACAATTT
GATGTGCATACCTTAAACTTAGCACTTGTACGTACATTGTTGTAATGTGGTCGATTCAGA
TAGTTTTCTGAGGAATAAAGTTAACTCTTGTTACTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5639 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g13160.1	310	5e-77	protein\|viral-response family protein, expressed
Brachypodium v1_2	Bradi1g44710.1	304	4e-77
Arabidopsis v10	None