barSeed - Barley Seed Development Database

Probe CUST_10771_PI390587928

Source Contig U35_5640

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10771_PI390587928	Hv_44K_v2	CCGTCTATCCTGTGGTCAGTTCAGTTTTGATGTTTATTGGTTATAGTTACAATGTATTCT	1107	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.915	1.236	1.755	1.576	0.731	0.889
Raw	156.426	335.092	408.427	568.918	94.218	123.921

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33189.2	2585	2e-24	2000 - 2059	100	60 / 60	plus	ABC11808
MLOC	MLOC_33189.3	2845	2e-24	2133 - 2192	100	60 / 60	plus	ABC11808
MLOC	MLOC_33189.5	2831	2e-24	1981 - 2040	100	60 / 60	plus	ABC11808
MLOC	MLOC_33189.4	3039	2e-24	2118 - 2177	100	60 / 60	plus	ABC11808
MLOC	MLOC_33189.1	4533	2e-24	2316 - 2375	100	60 / 60	plus	ABC11808
MLOC	AK354365	2392	7e-23	2292 - 2351	98	59 / 60	plus	ABC11808
JLOC1	JLOC1_21534.1	2625	8e-25	2070 - 2129	100	60 / 60	plus
Harvest21	ABC11808	1198	3e-25	32 - 91	100	60 / 60	minus	ABC11808
Harvest35	U35_5640	1198	3e-25	1108 - 1167	100	60 / 60	plus

Contig Sequence (1198 bp)

>U35_5640 1198 Hv_44K_v2
GGTTCCATTAAAGATGAGCGAAAGGCCATGGGATATGCAGAAGAATTGTGGTGGTGAGAG
CCTGTTACTCCCCAATGTCCGGAAAGGTTTGCAGAACTTCACATGGAGTCAGGCTCGAGG
CCTGAATTCTCATCACCAGAAATTTGGCAATGGTATTCTAGTTGTGAAAAGTGAGACTTC
ACAACGTAGCAATGGGGCTGCACATAGCCCTGGAGTGAGCCCATTTCAGCTTCAGAATTC
ACAGCAGATACTGACACAGCCACCACCTCAGTCACAGACACCAAGGCATATAGATTTTAG
CGTAGGGTCTAGTTCAAAATCTGGTGTTTTGACTTCACAAGCAGCTCTGTTGGGTGGGGA
GAATGGCAGTGTCGATGGCTTGTGTAAGGACCAAGTGCCCCCTGCAATGGAGGGCCAGCA
ACCAAGAAAGAGGGGAAGAAAACCAGCAAATGGGAGAGTAGAGGCACTCAACCATGTTGA
GGCTGAGCGCCAAAGGAGGGAAAAACTCAACCAGAGGTTCTATGCACTGAGAGCTGTTGT
TCCCAATATCTCAAAAATGGACAAAGCATCACTCCTGGGAGATGCCATAACGCACATCAC
TGATCTCCAGAAGAAGCTCAAAGAGATGGAGTCAGAGAGAGACATGTTCTTGGAGTCTGG
TATGCCAGACCGCATGGTCCGAACACCTAGGCCAGAAGTAGATATCCAGGTGGTGCAAGA
TGAGGTTCTTGTTCGTGTAATGTCACCTATGGACAACTATCCAGTAAAGAATGTGTTCCA
AGCTTTTGAAGAGGCAGAAGTCAAAGTGGGCGAATCAAAGATCACATCCAACAATGGGAC
AGTTGTGCATTCCTTCGTTATCAAGTCCCCTGGCTCTGAACAGCAAACAAGGGAGAAATT
GATTGCCGCGATGTCTCGTGCTATGAGCTCCATGTAGAATTGATTGATAACTTAATGCAT
TAGATGTCAGATTGCTTTTCTGGCTGTGAACAGGTAGCAATGGTAGGACTCCTCAGTGTC
CATGTAATTGCTACATGACCACAGAAAGCTCAGATTCTGACTTTGCAGAATAATCTGTAT
GTGCAAATTACTGCCGTAAATCTTTAACCGTCTATCCTGTGGTCAGTTCAGTTTTGATGT
TTATTGGTTATAGTTACAATGTATTCTAGCTATTTATTATAACCAAAATAAACGAACT

Homology of Contig U35_5640 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g13460.1	618	6e-136	protein\|helix-loop-helix DNA-binding domain containing protein, expressed
Brachypodium v1_2	Bradi2g08080.1	618	2e-137
Arabidopsis v10	AT1G01260.1	590	5e-52	basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr1:109595-111367 FORWARD LENGTH=590