barSeed - Barley Seed Development Database

Probe CUST_10768_PI390587928

Source Contig U35_5643

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10768_PI390587928	Hv_44K_v2	TTTTGAACTCCAAGGCTTTGTTATGGTGAGTCTGGTCGATTGGGGCCAGTTGTAATGACA	1424	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.525	1.496	1.042	1.026	0.585	0.764
Raw	1734.083	2688.384	1627.803	2478.068	508.613	714.210

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252696.1	1529	2e-24	1406 - 1465	100	60 / 60	plus	ABC12155
MLOC	MLOC_52881.1	1445	2e-24	1351 - 1410	100	60 / 60	plus	ABC12155
JLOC1	JLOC1_33915.1	1358	8e-25	1093 - 1152	100	60 / 60	plus
Harvest21	ABC12155	1520	3e-25	1425 - 1484	100	60 / 60	plus	ABC12155
Harvest35	U35_5643	1520	3e-25	1425 - 1484	100	60 / 60	plus

Contig Sequence (1520 bp)

>U35_5643 1520 Hv_44K_v2
GGCCAGAGGAGGCGAGGAACACATGGTCTCTTTCCTCCCCGCTGGAGAGTAGCTGCCAAG
ACCACCACGGAAGCGGAGGCGCACCACCCAGGCGGGCCATTCTCGCCGAGCCCCTCCCCC
TCCCCCGGCCGCCGCGCCCTCGCCTCCGGGGATCGCGGGATTGGGCGGCCATGGACACCT
CTACTAGGGCGGCCAAGATCCCCTCCCTCCCCCAACAGACGGAGATCAACTGGGACAACC
TCGACATGACCAAGCTCTATGTGGTTGGGGCCGGCATGTTCAGCTGCGTGACCGTGGCGC
TCTACCCGGTCTCTGTGATCAAGACCCGGATGCAGGTTGCCTCCGGGGAGGCCATGAGGA
GGAACGCCCTGGCCACCTTTAAGAACATCCTCAAGGTGGATGGGGTGCCTGGGCTCTACC
GAGGGTTTGGGACCGTCATCACTGGGGCTATCCCGGCTAGGATTATCTTCCTCACGGCGC
TCGAGAAGACAAAGGCGACTTCGCTCAAGCTTGTCGAGCCTCTTCAGCTGTCAGAGTCGA
TGGAGGCTGCCCTTGCTAATGGCCTTGGTGGTTTGACGGCGTCTCTGTGTTCGCAGGCCG
TGTTTGTGCCCATTGATGTGGTTAGTCAGAAATTGATGGTTCAAGGATATTCTGGTCATG
TTAGATATAAGGGTGGAATCGATGTTGTTCAAAAGATTATGAAAGCTGATGGGCCACGGG
GATTGTACAGAGGATTTGGCCTATCTGTTATGACGTATGCACCATCTAGCGCTGTGTGGT
GGGCAAGCTATGGATTCAGCCAGCGTGTAATTTGGAGTGCTCTTGGCCGTTTGAATGATA
AAGAAGATACTCCTAGTCAGTTGAAAATAGTCGGTGTTCAAGCAACAGGGGGAATGGTTG
CTGGGGCAGTGACCTCTTGTGTTTCAACTCCTCTAGATACAATCAAAACCAGGCTGCAGG
TTAATATCAACAAGCCAAAAGCCAGTGAAGTAGTTAGAAGATTGATCGCTGAAGATGGAT
GGAAAGGTTTCTACAGAGGGTTAGGCCCAAGGTTTTTCAGCTCATCTGCTTGGGGTACAT
CAATGATCGTATGCTACGAATACCTAAAGCGTGTATGTGCTAAAGTTGAAGAGGCCTGAG
TCGCCCGACATCTCCTTATGTGGTTCCTGCAAAAAACGCTGGAAGTTTTGTTGGTAGCCT
AAAAGCAACAATACTACAAGAAGGCATCGGTGACACCCACTGAAGCTCTGTTTCTCGCTG
ACTTGATAGCTAGACAGTGGTTCTTACAAGCTTTGGTGCCCCTGGAGGGTATTTTTTTTG
GCGGAATATTTGAGGCTCGTATTAGCTGCTGCCTCTAGTGACAGCTATGGGTTAGGCAGA
ATGCTCATATAAACCAAGAGATCAGATGTATTCAATTTCTATTCTTTTGAACTCCAAGGC
TTTGTTATGGTGAGTCTGGTCGATTGGGGCCAGTTGTAATGACACGTGAGGGGCAAGCTT
CGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5643 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g54760.1	322	0.0	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi1g08301.1	323	0.0
Arabidopsis v10	AT5G15640.1	323	1e-141	Mitochondrial substrate carrier family protein \| chr5:5087590-5089677 FORWARD LENGTH=323