barSeed - Barley Seed Development Database

Probe CUST_10762_PI390587928

Source Contig U35_5649

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10762_PI390587928	Hv_44K_v2	GACGTTGTTCACAGAAACTTCACTGTGTGATGTATTTTGTCGGATAAGCGTTTACCTGTT	1082	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.638	1.619	1.136	0.752	0.310	0.334
Raw	3275.427	5025.800	3155.513	3173.473	469.676	553.241

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62922.1	1145	2e-24	1083 - 1142	100	60 / 60	plus	ABC13197
JLOC1	JLOC1_41206.1	1317	8e-25	1128 - 1187	100	60 / 60	plus
Harvest21	ABC13197	1168	3e-25	1083 - 1142	100	60 / 60	plus	ABC13197
Harvest35	U35_5649	1179	3e-25	1083 - 1142	100	60 / 60	plus

Contig Sequence (1179 bp)

>U35_5649 1179 Hv_44K_v2
GCAAAGACGGCCATCATCATCGTCGCCTTGCGTTCTTCTTCCCACCTCCCAAAAACCCTA
CACCCCGCGACGACCAACCGGCGGCCGCCATGCTCCTCCGGCGACCACTTCAGGCGCTCA
CCCTTCCCCTCATTCGTCGGCACTTCTCTGCCTCCGCCGCAGCGGTTTCCGCTCCAGATC
ACAACATCGACGAACTCCTGTCACCGCCGTTCGACTACCTCCCTGGTCACCCGCGGCCGG
ACGCGAAGCACGACGAGGTGATCTTCGCCGTGCCGAGGGACAACTCTGGCCGGCACTTCG
CGGCCAAGGAACGCAAGGCTGGGCGTGTGCCGGCCATCGTCTTCGAGCAGGAGAATGGCC
AGGAGGGAGGCAACAAGCGCCTCGTCTCGGTGTCGTCCAAGCAGATCCGCAAGCTCGTCG
ACCACCTCGGGCGATCCTTCTTCCTCTCCCGCCTCTTCCGTCTCCAGGTTTGGTCCGAGC
ACGCTGGGCAGGGGGACCTCATCGAGAGCGTCCGCGTCCTGCCGCGCAAGGTGCACTTGC
ATGCAGGCACTGATGAACCTCTGAATGTGACATTCATGAGAGCACCTTCTTCGGCGCTGC
TCAAAATAGATGTTCCTTTAATGTACATTGGAGAGGATGCCTCACCTGGCCTCAGGAAAG
GAGCTTACTTCAACACCATAAAACGAACTGTCAAGTTTCTCTGCCCTGCTGACATAGTCC
CGCCATACATTGAAGTGGACCTAAGCGAGTTGGACGTTGGGCAGAAACTGCTGATGCGTG
ATCTGATAGTCCACCCGGCGCTGAAACTGCTTCAGTCGCCAGATCAACCCATCTGTAGCA
TTATAGGGTCAAGGGCCCCCGACCAGAAGAAAGAGAAAGAGAAATCAAAATAACTTGCTC
CACTGTATTAACTATTTGCAACAGAATAAACTTGTTTTGCTATCCATGCTTGAGTTATTC
AGTTCTTGATTATGCCACCTAGAACGAATATTACTAGGATGATTTTGTAGCCAGAGACCA
AGGAGTGGAAGACGGATGCTACATATAAGAATACGGCAGGAATGTCCAAATATGTTTTAT
GCGACGTTGTTCACAGAAACTTCACTGTGTGATGTATTTTGTCGGATAAGCGTTTACCTG
TTGACAAAAAAAAAAAAAAAAAAAAGCTCGAGGGGGGGC

Homology of Contig U35_5649 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g18750.1	266	2e-163	protein\|ribosomal protein L25, putative, expressed
Brachypodium v1_2	Bradi2g42450.1	270	1e-174
Arabidopsis v10	AT4G23620.2	277	2e-103	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain \| chr4:12315016-12316659 REVERSE LENGTH=277