barSeed - Barley Seed Development Database

Probe CUST_10760_PI390587928

Source Contig U35_5651

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10760_PI390587928	Hv_44K_v2	TGCCCTAGGTGACAAAGAGTGTAATAATCATGTCGGGTAATGAAGCTTACACAATTATTT	987	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.036	2.814	1.189	0.703	0.220	0.277
Raw	143.898	215.492	77.461	73.225	7.397	11.125

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17902.2	2432	2e-24	2356 - 2415	100	60 / 60	plus	ABC12759 ABC12760
MLOC	MLOC_17902.1	3415	2e-24	3349 - 3408	100	60 / 60	plus	ABC12759 ABC12760
JLOC1	JLOC1_12370.1	2039	8e-25	1942 - 2001	100	60 / 60	plus
Harvest21	ABC12759	1066	3e-25	19 - 78	100	60 / 60	minus	ABC12759
Harvest35	U35_5651	1065	3e-25	988 - 1047	100	60 / 60	plus

Contig Sequence (1065 bp)

>U35_5651 1065 Hv_44K_v2
GCCGATACCTTACCTTACCCGAAACAGCAAGCTCCTTCTATCATCTAAGTAAAGTGCATG
ACTCTCACAACATAGCATTTACTTGCAAGGCTTGGGGTATAAGGGCCACAGATCTTAACC
AAGGCGTCGTCTATGGAATCAGAACAGATGAAACTGCTATGCATGAAGAGCTTTCCAATA
GGTTGGACTATGACGGAATCTTTGGAACAGCACTAAATAGGTTCTGTGTTCAGGCAGCTG
TAGGTCACCCTCTTACAGTTTATGGAAAAGGTGGTCAGACCCGTGGATACCTGGACATCA
GGGATACCGTGCAGTGCGTGGAGCTAGCAATCGCAAACCCAGCCAAACCTGGCGAGTTCA
GGGTCTTCAACCAATTCACCGAGCAGTTCTCCGTGAACGAGCTAGCCAAGCTGGTGACCG
CCGCGGGAGCGAAGCTCGGGCTGGACGTGCAGACCAAGTCGGTGCCCAACCCGCGCGTCG
AGGCGGAGGAGCACTACTACAACGCCAAGCACTCGAAGCTCTCGGAGCTCGGGCTGGTGC
CCCACCTGCTGTCGGACTCGCTCCTCGACTCGCTGCTCAACTTCGCCGTCCAGTACAAGG
ACAGGGTCGACACAGCGCAGATCATGCCCAGCGTGTCGTGGAAGAAGATGGGGGCCAAGC
CGAAGACGATCTCTGTATAGAGGGAGGGACGGAGCTCCCCCTCTGTTATGTGGCGTATGA
TGTCAACCATGCCATTGACATTATATCTTGTTGTGTGTAATGTAGCGGTAATAATGCGCG
CTAGTTTTGGTGCACACGCTGTAGTTGAGGCGTGGGAGTTGCTGGTTTACGCTGTTATAG
TAGATTTCATTTTTGCCCCACGGATGGGAACTGCAATTAGAGAGCATATGTGTGGTATGT
TGTTAATTCTGACTAGCAAATTTAGCTACAGTGGGTGTTACTAGAGGTTTCGGGCTACAT
TATAGCACTGGTTAATGGTTATATTGTTGCCCTAGGTGACAAAGAGTGTAATAATCATGT
CGGGTAATGAAGCTTACACAATTATTTCTAAAAAAAAAAAAAAAA

Homology of Contig U35_5651 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g32140.1	480	1e-139	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi3g34340.1	484	2e-141
Arabidopsis v10	AT4G33030.1	477	3e-126	\| Symbols: SQD1 \| sulfoquinovosyldiacylglycerol 1 \| chr4:15936051-15937566 FORWARD LENGTH=477