barSeed - Barley Seed Development Database

Probe CUST_10759_PI390587928

Source Contig U35_5652

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10759_PI390587928	Hv_44K_v2	CAAATTTAGCTACAGTGGGTGTTACTAGAGGTTTCGGGCTACATTGTAGCACTGGTTAAG	428	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.859	3.431	1.208	0.735	0.230	0.298
Raw	738.374	1049.985	314.058	315.856	34.777	47.938

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17902.2	2432	3e-22	2285 - 2343	98	58 / 59	plus	ABC12759 ABC12760
MLOC	MLOC_17902.1	3415	3e-22	3278 - 3336	98	58 / 59	plus	ABC12759 ABC12760
JLOC1	JLOC1_12370.1	2039	1e-22	1871 - 1929	98	58 / 59	plus
Harvest21	ABC12760	488	3e-25	1 - 60	100	60 / 60	minus	ABC12760
Harvest21	ABC12759	1066	2e-21	91 - 150	97	58 / 60	minus	ABC12759
Harvest35	U35_5652	488	3e-25	429 - 488	100	60 / 60	plus
Harvest35	U35_5651	1065	5e-23	917 - 975	98	58 / 59	plus

Contig Sequence (488 bp)

>U35_5652 488 Hv_44K_v2
AGCACTACTACAACGCCAAGCACTCGAAGCTCTCGGAGCTCGGGCTGGTGCCGTATCTGC
TGTCGGACTCGCTCCTCGACTCGCTGCTCAACTTTGCCGTCCAGTACAAGGACAGGGTCG
ACACAGCGCAGATCATGCCCAGCGTGTCGTGGAAGAAGATGGGGGCCAAGCCGAAGACGA
TCTCTGTATAGAGGGAGGGACGGAGCTCCCCCTCTGTTATGTGGCGTATGATGTCAACCA
TGCCATTGACATTATATCTTGTTGTGTAATGTAGCGGTAATAATGCGCGCTAGTTTTGGT
GCACACGCTGTAGTTGAGGCGCGGGAGTTGCTGGTTTACGCTGTTATAGTACTAGATTTC
ATTTCTGCCCCACGGGTGGGAACTGCAATTAGAGAGCATATGTGTGGTATGTTGTTAATT
CCGACTAGCAAATTTAGCTACAGTGGGTGTTACTAGAGGTTTCGGGCTACATTGTAGCAC
TGGTTAAG

Homology of Contig U35_5652 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None