barSeed - Barley Seed Development Database

Probe CUST_10758_PI390587928

Source Contig U35_5654

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10758_PI390587928	Hv_44K_v2	CGTTTTTGACGCTACACTGAAAGTGGAAGGCCTAGTTTGGCAGCAGAGTTTTATAAAACC	1355	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.310	1.746	1.171	0.730	0.270	0.250
Raw	530.092	1071.783	643.869	619.780	83.106	81.489

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19810.1	3018	9e-22	3 - 60	98	57 / 58	minus	ABC13044 ABC34541
JLOC1	JLOC1_13724.1	615	5e-22	492 - 549	98	57 / 58	plus
Harvest21	ABC13044	834	3e-25	1 - 60	100	60 / 60	minus	ABC13044
Harvest35	U35_5654	1415	3e-25	1356 - 1415	100	60 / 60	plus

Contig Sequence (1415 bp)

>U35_5654 1415 Hv_44K_v2
CCCCGGGCTGAGGAATTCGGACGAGGGGGCTGTCAATAGGCTGTTGGACGTGTCATCAGA
CATCGCCATGACTATGGAGCAATTATTTACTGTGACGAAAGGTTTGTGTGGCCAAATTAC
CAATCCCAGATGTCCTATTGGCTCAAACCTTATATAAAGTGCTACTCAAAGTATGGGGAA
GTAGTTCAAACACTGACAAGATTTTTCCGGGATAAAGTTTGTGTAGACCCAAAAGAGATG
GACTGTAATGATAGTGTTACACCGCCTGCAGACAAATGTCTGCCGCAGAAGATTGTATCT
GACTCGCCTGCCACAGCAGTAAATGGGCACCGGGGAACTACAGTATCATTGAATGCAACC
ACCAGAAAAAACAACTATATGAAGTTTACCCAGATCACTCCTGCCAATCGCACCACCCTT
CCTATGAAACATGGCTGTTCCACATCTTCACAGCACGTATCCTCAAGGGGCCAAATTTCT
CAGGATTCTCAGGTTGTTGATTTGATCGATAATGCGGCCATGCATGGACAATTGAAGGAA
CATGCCTTAAAGTCTATGAGACTTAAGAAGGCTAAAATAGCAGATGTCTCTTCACAATTG
AAACATAATGTTGAGTCGAGAGCTTTGACTGGAAACCAAGGTCAACAATCTACACCTCCA
TCGAAAAGAAGTACCATTGAACAAGCATGTGAAAAGAATGAGGCTATTCAAGAAAGATGT
GGTGGCCCGGAATCTACTACTGGACCGGCCTTCTTGAAGTTGGCTCGAGAAAAGCTCAGT
ACTGCAGAGTATGGAGAGTTTGTTGAATTTATGAAGGCCTTAAAATTGAAAACCATGCAC
ATCAAAGACTCACTTGAAGCAATAGCGAAACTGTTTTCTTCTCCAGGGCGACTCACACTT
CTTGAAGGGTTCAGGGTCTTTGTTTCTAAGAATCATCTTCCATTATATGAGCAGCTTGTT
AAAAAATATACCATGGCTAATACATAATGACATCATCTGTTGCACATATTTAAAGATGAA
ATGTGGAAAAACCTCGAGAAGCAAGCCCAAAGAATTCCACTGAATTCATGCAATTAACTT
ATGGGAAGTGTAAGTTCTTGAAGCCATCTGAGGTTTTCATCCCAATCAGTGCATTGCACA
TATCGTGGAGTATGTGTAGGGATCTTCAACTGTAAATTAAAAAATGTAATTATCCCATAT
TATGTTTCTGGAAATAGGTTTATATAACTCATTATCTGTAGTTTGGTGCTGGTACATTTG
GTTTAATGAGCATTCCCATGTTTTCAGCAATGGGCTTAGCTTATGGTTGTTGTGTTGAAC
TTATGTTGTACTCCCTCCGTCCCACAATATAAGAACGTTTTTGACGCTACACTGAAAGTG
GAAGGCCTAGTTTGGCAGCAGAGTTTTATAAAACC

Homology of Contig U35_5654 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g40980.1	1015	1e-125	protein\|helicase, putative, expressed
Brachypodium v1_2	Bradi2g42410.1	997	3e-148
Arabidopsis v10	None