barSeed - Barley Seed Development Database

Probe CUST_10753_PI390587928

Source Contig U35_5659

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10753_PI390587928	Hv_44K_v2	AAGGGTGACCATTCTCAGTGAGATAATTGTGACATACAAAGGTTTTTACCTGAGAAAAAA	2088	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.326	1.599	1.177	0.731	0.263	0.281
Raw	2337.273	4312.560	2773.997	2720.756	342.445	400.364

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32593.1	2522	9e-22	2426 - 2480	100	55 / 55	plus	ABC09348 ABC13695
JLOC1	JLOC1_21234.1	1981	5e-22	1660 - 1714	100	55 / 55	plus
Harvest21	ABC13695	2136	3e-25	2066 - 2125	100	60 / 60	plus	ABC13695
Harvest35	U35_5659	2159	3e-25	2089 - 2148	100	60 / 60	plus

Contig Sequence (2159 bp)

>U35_5659 2159 Hv_44K_v2
AAGAAACAAGACTGCAACAGAGTTCGCTATATCACTTGTCCAGACATTGATTACCCAAGA
ACCCAATGGCGTTTCTGAGCTTTGTAATGTTGTTGATGCATTATCGAAGCTTGCAATCAG
GCCTGGTTCACCTGAATCATTGCAGCAGTTGATTGAGATTGCAAGGAGTCATTTCAAGAA
TGCTGCTAGCTTTGCTGCCATGAAGGATGACAAGGTTTTATCTGGTCGTCCTTCAATATA
TAAAGAAGAAAATGATTCTGCTTTTGCAGATGCTGTTAGTTTTCAAGACCAGGTCGCAGT
TTTATTCTCGGACTGGTGTCACATATGTGATCATCCAACTTTGGGTGATTCAGCATATAG
TCATTACATTGTGCAGTTGCAACAACATGGCTTGCTCAAGGGAGATGATTTGACTGACCG
CTTCTTCCATACTCTCACGGAACTTGCGGTCACACATGCTGTTGTCTCTGAGCAAGTTAT
CGCTCCTGGTGGGATGTCTCAGCAGTCGGCCCAACAACTCCAGATTTCATATTTCTCAGT
TGATTCATACTCAAAGCTTGTGACTTTAATGTTCAAGTATGGCGTGGATTTAGGACCAAA
CAAAGGCAGCCTTCTTCCGAAGATTCTCTCCATAACAACTAGGATCATTCAGAAAGATGC
TGAAGAAAAGAAAGTTTCTTTCAACCCTCGGCCATATTTTAGATTATTTATAAATTTGCT
AAGTGAGCTTAGCACTGCTGACCTTCATGATGGTGCTAGTTTTCAGGTTTTGACTGCATT
TGCAAATGCTTTCCATGTGCTTCAACCCTTGAGAGTTCCTGCATGGAGTTTTGCTTGGCT
TGAATTGGTAAGCCATAGAAGCTTCATGCCGAAGTTATTGCTGTGCAATTCACAAAAGGG
CTGGCCATTCTTCCAGAGGCTGCTTGGTGATTTGTTCAAATTTATGGAACCATATCTAAG
AAACGCTGAGCTGGGACAGCCCATTCAGCTTTTATACAAAGGAACTTTGAGAGTGCTGCT
TGTTCTACTCCATGACTTCCCTGAGTTCCTCTGTGACTACCACTTCAGTTTCTGTGATGT
GATTCCCCCAAGCTGCATTCAAATGCGTAATGTTATTCTTAGTGCTTTTCCACGCAATAT
GAGACTTCCTGACCCCTCTACTCCTAATCTGAAGATTGACCTGCTAGCTGAAATTTCAGT
AGCTCCAAGAATCATGTCTGATGTGGAAGGTGCTTTGAAGGCAAAGCAAATGAAGACCCA
GGTTGACGAGTACCTCAAGAGACCAGAAGGTTCGTCCTTATTAACTGATTTGAAGCAGAA
GTTATTGCTGCCTCCAAATGAAGCGAACGTTGCTGGGACTCGTTATAATGTTCCCTTAAT
TAATTCTCTTATCGTCTATGTTGGCATCCAGGCTGTGCAACAATTGCAGCATAACAAGGC
GAATGCATCAGCATCAGCGCAGCAAATGAACCAAAGTCCTCAGGTGGATGTTTTTCAGAT
TGAAACAGCCACTGAGGTCTTCAGAAATCTTATAGTGAATATGGATACCGAAGGCCGCTA
CCTCCTCCTGAACGCGATTGCTAACCAGCTACGCTATCCAAACAATCATACCCACTACTT
CTCCTTCATCATTTTGTACTTGTTTGCTGAGGCAACACAGGATATTGTACAGGAGCAGAT
AACAAGAGTTCTTTTAGAGCGCCTAATAGTTAATCGTCCTCATCCCTGGGGATTACTTAT
TACTTTCATTGAGCTCATAAAGAATCCACGCTATAGCTTTTGGGCTCGATCCTTTACACG
CTGTGCGCCGGAGATTGAGAGGCTGTTTGAGTCTGTTGCAAGGTCTTGTGGAGGTAAAGC
AGCGGAAGAGGGAGTTCTTGCTGATGGTGGCCATTAGAGAATGTTTTATGCATACTGTGA
GCTGTTTGTATTATGAGTGTTAGGATTCTTTGGGACAGGCTGTTTTTGTGCAGTTTTGCT
GTAAATTTTTGTGAACTCGCTCTTGTCATGTCGAGCACTTCAGGTTTACAGGGTAATATT
TGTATCTAGCGGTAGTATGCATGTCAGCTGATATATAATGCTGTTCTGAAGGGTGACCAT
TCTCAGTGAGATAATTGTGACATACAAAGGTTTTTACCTGAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5659 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g40780.1	2407	protein\|CCR4-Not complex component, Not1domain containing protein, expressed
Brachypodium v1_2	Bradi3g33190.1	2393
Arabidopsis v10	AT1G02080.1	2431	transcription regulators \| chr1:373335-386682 FORWARD LENGTH=2431